Wall clock time and date at job start Mon Mar 30 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.71057 * 125.44919 * 2 1 4 4 C 1.76078 * 90.36366 * 180.19625 * 3 2 1 5 5 C 1.47138 * 125.50467 * 179.80082 * 4 3 2 6 6 O 1.21638 * 119.99848 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00302 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00210 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47419 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.47526 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47391 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00284 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99558 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00376 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46970 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47145 * 119.99767 * 15 13 11 18 18 H 1.48500 * 109.47570 * 240.00173 * 15 13 11 19 19 N 1.30734 * 108.99639 * 359.82289 * 4 3 2 20 20 C 1.30860 * 115.87487 * 359.97438 * 19 4 3 21 21 O 1.36053 * 122.16849 * 179.97438 * 20 19 4 22 22 H 1.08998 * 109.47571 * 270.12004 * 1 2 3 23 23 H 1.09004 * 109.46530 * 30.11914 * 1 2 3 24 24 H 1.08998 * 109.46937 * 150.11590 * 1 2 3 25 25 H 0.96997 * 119.99980 * 0.02562 * 7 5 4 26 26 H 1.08999 * 109.47137 * 299.99745 * 8 7 5 27 27 H 1.09001 * 109.47163 * 59.99825 * 8 7 5 28 28 H 1.09011 * 109.47225 * 300.00074 * 9 8 7 29 29 H 1.09001 * 109.47244 * 59.99693 * 9 8 7 30 30 H 1.09000 * 109.47283 * 299.99981 * 10 9 8 31 31 H 1.09001 * 109.47211 * 59.99548 * 10 9 8 32 32 H 0.97000 * 119.99629 * 180.02562 * 14 13 11 33 33 H 0.96700 * 114.00376 * 90.02424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3935 0.0000 4 6 3.9399 0.3814 -0.0060 5 6 5.3277 0.8704 -0.0131 6 8 5.5512 2.0660 -0.0157 7 7 6.3511 -0.0065 -0.0167 8 6 7.7328 0.4804 -0.0243 9 6 8.6933 -0.7105 -0.0278 10 6 10.1362 -0.2021 -0.0351 11 6 11.0822 -1.3751 -0.0378 12 1 10.6932 -2.3826 -0.0343 13 6 12.4445 -1.1623 -0.0438 14 7 12.9183 0.0646 -0.0476 15 14 13.6171 -2.6163 -0.0465 16 1 12.8380 -3.8806 -0.0408 17 1 14.4677 -2.5640 -1.2627 18 1 14.4778 -2.5605 1.1623 19 7 3.5776 -0.8747 -0.0037 20 6 2.2881 -1.0972 0.0028 21 8 1.7700 -2.3552 0.0054 22 1 -0.3634 0.0022 1.0276 23 1 -0.3632 0.8890 -0.5157 24 1 -0.3633 -0.8910 -0.5120 25 1 6.1729 -0.9599 -0.0151 26 1 7.9004 1.0843 -0.9161 27 1 7.9091 1.0873 0.8638 28 1 8.5259 -1.3149 0.8639 29 1 8.5169 -1.3170 -0.9161 30 1 10.3040 0.4025 -0.9264 31 1 10.3124 0.4042 0.8535 32 1 13.8766 0.2144 -0.0522 33 1 1.6244 -2.7188 0.8896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346409564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:07 Heat of formation + Delta-G solvation = -47.609891 kcal Electronic energy + Delta-G solvation = -17273.716624 eV Core-core repulsion = 14233.297717 eV Total energy + Delta-G solvation = -3040.418907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73695 -39.38900 -36.72176 -35.51600 -33.38330 -32.85790 -31.24351 -28.23613 -26.37116 -25.20788 -23.23257 -21.87500 -20.71191 -19.69739 -18.78677 -17.89238 -17.23007 -16.36854 -16.13014 -15.53268 -15.32181 -14.44902 -14.31261 -14.00273 -13.87119 -13.63963 -13.28267 -12.94584 -12.43462 -12.30109 -11.85612 -11.76534 -11.34912 -10.92180 -10.80996 -10.62946 -10.53873 -10.06886 -9.88313 -9.82943 -9.44531 -9.11411 -9.07663 -8.80688 -8.37235 -6.01899 -4.04679 -0.14055 0.73901 1.26044 1.88487 3.00431 3.07137 3.30694 3.38234 3.42071 3.53662 4.27849 4.44864 4.47632 4.65720 5.00816 5.15065 5.32734 5.34174 5.53196 5.66152 5.73298 6.12085 6.33440 6.57215 6.76216 6.94627 6.97635 7.17416 7.54711 7.63574 7.75344 7.96950 8.10830 8.38317 9.02170 9.59629 11.09476 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039760 B = 0.003022 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.049139 B = 9263.517066 C = 9933.965844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.275 4.275 3 S 0.275 5.725 4 C 0.001 3.999 5 C 0.590 3.410 6 O -0.529 6.529 7 N -0.695 5.695 8 C 0.115 3.885 9 C -0.122 4.122 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.437 5.437 20 C 0.237 3.763 21 O -0.460 6.460 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.410 0.590 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.346 0.209 1.801 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.400 4.400 3 S 0.530 5.470 4 C -0.274 4.274 5 C 0.371 3.629 6 O -0.406 6.406 7 N -0.345 5.345 8 C -0.007 4.007 9 C -0.160 4.160 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.162 5.162 20 C 0.058 3.942 21 O -0.265 6.265 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.245 0.755 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -25.744 1.873 1.187 25.840 hybrid contribution 0.281 -2.414 0.471 2.475 sum -25.463 -0.540 1.658 25.523 Atomic orbital electron populations 1.20201 0.85661 1.04041 1.03216 1.25818 1.03917 0.97886 1.12331 1.84042 0.94809 1.05907 1.62219 1.27367 0.99609 0.90872 1.09594 1.16684 0.82002 0.86130 0.78054 1.90877 1.84105 1.14665 1.50948 1.46026 1.06383 1.10348 1.71738 1.21830 0.77666 0.98711 1.02540 1.21917 0.97280 0.95570 1.01235 1.19036 0.87846 0.96757 0.97732 1.21244 0.91057 0.92917 1.50755 0.92542 1.25033 0.98501 0.95689 0.95277 1.69978 1.13123 1.19520 1.50702 0.86522 0.80986 0.82816 0.77588 1.19732 1.20996 1.21009 1.66395 1.17106 1.19202 1.13531 1.17698 0.85323 0.86218 1.04958 1.84954 1.81915 1.26034 1.33632 0.90211 0.90682 0.89632 0.75458 0.91111 0.91097 0.92509 0.92483 0.96174 0.96182 0.92981 0.74954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.21 36.01 0.37 -0.03 16 2 C -0.28 -2.48 6.38 -35.57 -0.23 -2.71 16 3 S 0.28 2.74 22.99 -107.50 -2.47 0.26 16 4 C 0.00 0.02 7.45 -14.41 -0.11 -0.09 16 5 C 0.59 9.26 7.80 -12.65 -0.10 9.16 16 6 O -0.53 -9.59 16.94 5.24 0.09 -9.50 16 7 N -0.69 -10.73 5.55 -61.48 -0.34 -11.07 16 8 C 0.11 2.01 5.67 -4.04 -0.02 1.99 16 9 C -0.12 -2.40 5.27 -26.74 -0.14 -2.54 16 10 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 11 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 14 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 15 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 N -0.44 -5.74 10.25 -11.60 -0.12 -5.86 16 20 C 0.24 2.62 7.74 -19.23 -0.15 2.47 16 21 O -0.46 -4.30 13.26 -19.91 -0.26 -4.56 16 22 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 0.46 7.98 -51.93 -0.41 0.05 16 25 H 0.41 5.77 8.13 -40.82 -0.33 5.43 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.39 1.77 9.07 45.56 0.41 2.18 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -33.30 309.56 -6.91 -40.21 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.26 Total: 0.05 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.93 Total: -4.68 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.28 Total: -43.00 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.18 Total: -14.06 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.47 Total: 0.26 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.30 -6.91 -40.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346409564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.401 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds