Wall clock time and date at job start Mon Mar 30 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.71057 * 125.44919 * 2 1 4 4 C 1.76078 * 90.36366 * 180.19625 * 3 2 1 5 5 C 1.47138 * 125.50467 * 179.80082 * 4 3 2 6 6 O 1.21638 * 119.99848 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00302 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00210 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47419 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.47526 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47391 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00284 * 180.02562 * 11 10 9 14 14 N 1.31523 * 119.99558 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00376 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46970 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47145 * 119.99767 * 15 13 11 18 18 H 1.48500 * 109.47570 * 240.00173 * 15 13 11 19 19 N 1.30734 * 108.99639 * 359.82289 * 4 3 2 20 20 C 1.30860 * 115.87487 * 359.97438 * 19 4 3 21 21 O 1.36053 * 122.16849 * 179.97438 * 20 19 4 22 22 H 1.08998 * 109.47571 * 270.12004 * 1 2 3 23 23 H 1.09004 * 109.46530 * 30.11914 * 1 2 3 24 24 H 1.08998 * 109.46937 * 150.11590 * 1 2 3 25 25 H 0.96997 * 119.99980 * 0.02562 * 7 5 4 26 26 H 1.08999 * 109.47137 * 299.99745 * 8 7 5 27 27 H 1.09001 * 109.47163 * 59.99825 * 8 7 5 28 28 H 1.09011 * 109.47225 * 300.00074 * 9 8 7 29 29 H 1.09001 * 109.47244 * 59.99693 * 9 8 7 30 30 H 1.09000 * 109.47283 * 299.99981 * 10 9 8 31 31 H 1.09001 * 109.47211 * 59.99548 * 10 9 8 32 32 H 0.97000 * 119.99629 * 180.02562 * 14 13 11 33 33 H 0.96700 * 114.00376 * 90.02424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4991 1.3935 0.0000 4 6 3.9399 0.3814 -0.0060 5 6 5.3277 0.8704 -0.0131 6 8 5.5512 2.0660 -0.0157 7 7 6.3511 -0.0065 -0.0167 8 6 7.7328 0.4804 -0.0243 9 6 8.6933 -0.7105 -0.0278 10 6 10.1362 -0.2021 -0.0351 11 6 11.0822 -1.3751 -0.0378 12 1 10.6932 -2.3826 -0.0343 13 6 12.4445 -1.1623 -0.0438 14 7 12.9183 0.0646 -0.0476 15 14 13.6171 -2.6163 -0.0465 16 1 12.8380 -3.8806 -0.0408 17 1 14.4677 -2.5640 -1.2627 18 1 14.4778 -2.5605 1.1623 19 7 3.5776 -0.8747 -0.0037 20 6 2.2881 -1.0972 0.0028 21 8 1.7700 -2.3552 0.0054 22 1 -0.3634 0.0022 1.0276 23 1 -0.3632 0.8890 -0.5157 24 1 -0.3633 -0.8910 -0.5120 25 1 6.1729 -0.9599 -0.0151 26 1 7.9004 1.0843 -0.9161 27 1 7.9091 1.0873 0.8638 28 1 8.5259 -1.3149 0.8639 29 1 8.5169 -1.3170 -0.9161 30 1 10.3040 0.4025 -0.9264 31 1 10.3124 0.4042 0.8535 32 1 13.8766 0.2144 -0.0522 33 1 1.6244 -2.7188 0.8896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346409564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:07 Heat of formation + Delta-G solvation = -75.028225 kcal Electronic energy + Delta-G solvation = -17274.905572 eV Core-core repulsion = 14233.297717 eV Total energy + Delta-G solvation = -3041.607855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61494 -40.55984 -37.49090 -37.05673 -35.23979 -33.62820 -32.96349 -29.50417 -27.86438 -26.02531 -24.91645 -22.93182 -22.34704 -20.90328 -19.62461 -18.69631 -18.57219 -18.11558 -17.13271 -16.91949 -16.52948 -16.39740 -15.57623 -15.24032 -14.64436 -14.37354 -14.23281 -14.00303 -13.78455 -13.76414 -13.43347 -12.99253 -12.78317 -12.58412 -12.37100 -12.06533 -11.89798 -11.70589 -11.45948 -11.21380 -10.91612 -10.59641 -10.55693 -10.29916 -9.72359 -8.19802 -6.30745 -1.00691 -0.09101 0.46207 0.99899 1.41608 1.41823 1.55093 1.92494 1.98763 2.41893 2.58901 3.14101 3.47080 3.81315 3.82121 4.11078 4.18639 4.53048 4.56195 4.66462 4.77317 4.89877 4.91862 5.12535 5.14956 5.27606 5.51588 5.70557 5.84302 6.09014 6.22914 6.36160 6.61285 6.86410 6.91068 7.38634 8.92488 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039760 B = 0.003022 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.049139 B = 9263.517066 C = 9933.965844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.251 4.251 3 S 0.321 5.679 4 C -0.045 4.045 5 C 0.593 3.407 6 O -0.562 6.562 7 N -0.691 5.691 8 C 0.128 3.872 9 C -0.104 4.104 10 C 0.025 3.975 11 C -0.541 4.541 12 H 0.064 0.936 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.449 5.449 20 C 0.214 3.786 21 O -0.466 6.466 22 H 0.103 0.897 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.417 0.583 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.065 0.935 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.264 0.736 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.550 -1.097 1.973 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.376 4.376 3 S 0.575 5.425 4 C -0.318 4.318 5 C 0.376 3.624 6 O -0.441 6.441 7 N -0.342 5.342 8 C 0.005 3.995 9 C -0.142 4.142 10 C -0.013 4.013 11 C -0.579 4.579 12 H 0.082 0.918 13 C -0.200 4.200 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.184 1.184 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.176 5.176 20 C 0.035 3.965 21 O -0.275 6.275 22 H 0.121 0.879 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.254 0.746 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -27.964 0.536 1.371 28.003 hybrid contribution 0.783 -1.990 0.430 2.181 sum -27.181 -1.454 1.800 27.279 Atomic orbital electron populations 1.20440 0.82864 1.05130 1.04983 1.26345 1.05585 0.96917 1.08708 1.83882 0.92779 1.05218 1.60592 1.26761 0.99325 0.91989 1.13731 1.16933 0.83012 0.85581 0.76847 1.90845 1.84914 1.15876 1.52448 1.45819 1.05540 1.10828 1.72026 1.21449 0.78709 0.97493 1.01853 1.21621 0.94279 0.96222 1.02070 1.18934 0.91216 0.95717 0.95415 1.21703 0.91943 0.93860 1.50400 0.91806 1.25998 1.00568 0.98646 0.94790 1.70112 1.13680 1.21899 1.51729 0.85378 0.78477 0.79373 0.77687 1.18431 1.20511 1.20466 1.66321 1.18640 1.19455 1.13204 1.17845 0.84977 0.87306 1.06332 1.84923 1.81535 1.25453 1.35569 0.87884 0.89056 0.89020 0.74573 0.91986 0.91810 0.91506 0.91651 0.98584 0.98500 0.92768 0.72745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.21 71.24 0.73 0.18 16 2 C -0.25 -3.85 6.38 24.87 0.16 -3.69 16 3 S 0.32 5.80 22.99 -56.49 -1.30 4.51 16 4 C -0.05 -1.18 7.45 87.19 0.65 -0.53 16 5 C 0.59 18.83 7.80 86.58 0.68 19.51 16 6 O -0.56 -20.77 16.94 -4.15 -0.07 -20.84 16 7 N -0.69 -21.56 5.55 -466.66 -2.59 -24.15 16 8 C 0.13 4.61 5.67 86.38 0.49 5.10 16 9 C -0.10 -4.12 5.27 30.59 0.16 -3.96 16 10 C 0.02 1.30 4.97 29.84 0.15 1.45 16 11 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 12 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 13 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 14 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 15 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 N -0.45 -11.42 10.25 -303.98 -3.12 -14.53 16 20 C 0.21 4.34 7.74 84.02 0.65 4.99 16 21 O -0.47 -7.75 13.26 -94.15 -1.25 -9.00 16 22 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 24 H 0.09 0.65 7.98 -2.39 -0.02 0.63 16 25 H 0.42 11.68 8.13 -92.71 -0.75 10.93 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.41 2.80 9.07 -74.06 -0.67 2.13 16 Total: -1.00 -72.39 309.56 -1.93 -74.32 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -0.27 Total: 7.18 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 4.36 Total: -6.93 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -5.42 Total: -95.51 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.32 Total: -29.83 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.30 Total: 4.51 kcal Total: -72.39 -1.93 -74.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346409564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.709 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds