Wall clock time and date at job start Mon Mar 30 2020 01:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38596 * 120.79970 * 2 1 4 4 N 1.32333 * 119.10260 * 180.02562 * 3 2 1 5 5 C 1.31794 * 120.81891 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.11812 * 179.97438 * 5 4 3 7 7 S 1.81403 * 109.46806 * 90.00671 * 6 5 4 8 8 O 1.42107 * 108.57856 * 294.48034 * 7 6 5 9 9 O 1.42099 * 108.58021 * 65.50740 * 7 6 5 10 10 C 1.81404 * 101.92036 * 179.97438 * 7 6 5 11 11 C 1.53002 * 109.47073 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.46917 * 180.02562 * 11 10 7 13 13 H 1.07996 * 120.00050 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99493 * 180.02562 * 12 11 10 15 15 N 1.31505 * 120.00522 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99707 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47167 * 89.99873 * 16 14 12 18 18 H 1.48498 * 109.47138 * 210.00169 * 16 14 12 19 19 H 1.48499 * 109.46768 * 330.00005 * 16 14 12 20 20 N 1.31794 * 121.75681 * 0.02562 * 5 4 3 21 21 C 1.32338 * 120.81727 * 359.97438 * 20 5 4 22 22 H 1.08996 * 109.46709 * 269.97476 * 1 2 3 23 23 H 1.08994 * 109.47421 * 29.97797 * 1 2 3 24 24 H 1.09006 * 109.46880 * 149.97746 * 1 2 3 25 25 H 1.08003 * 120.44608 * 0.04351 * 3 2 1 26 26 H 1.09002 * 109.46793 * 210.00101 * 6 5 4 27 27 H 1.09002 * 109.47619 * 330.00410 * 6 5 4 28 28 H 1.08994 * 109.47328 * 300.00261 * 10 7 6 29 29 H 1.09003 * 109.47064 * 59.99697 * 10 7 6 30 30 H 1.08999 * 109.46963 * 299.99665 * 11 10 7 31 31 H 1.08998 * 109.46826 * 60.00257 * 11 10 7 32 32 H 0.97002 * 120.00179 * 179.97438 * 15 14 12 33 33 H 1.07992 * 120.44490 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1513 -0.0005 5 6 4.1809 0.0000 -0.0005 6 6 5.6879 0.0001 -0.0017 7 16 6.2938 0.0006 1.7081 8 8 5.9188 1.2267 2.3209 9 8 5.9188 -1.2249 2.3218 10 6 8.0919 -0.0001 1.4684 11 6 8.7881 0.0009 2.8309 12 6 10.2819 0.0009 2.6318 13 1 10.6935 0.0007 1.6333 14 6 11.1229 0.0013 3.7243 15 7 10.6217 0.0021 4.9401 16 14 12.9746 0.0005 3.4775 17 1 13.4657 1.4004 3.4113 18 1 13.6252 -0.6991 4.6143 19 1 13.3048 -0.7003 2.2106 20 7 3.5395 -1.1514 -0.0005 21 6 2.2167 -1.1905 0.0000 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6972 2.1373 0.0007 26 1 6.0508 -0.8901 -0.5155 27 1 6.0508 0.8899 -0.5161 28 1 8.3839 -0.8904 0.9115 29 1 8.3845 0.8895 0.9106 30 1 8.4961 0.8915 3.3874 31 1 8.4956 -0.8885 3.3890 32 1 11.2134 0.0019 5.7087 33 1 1.6973 -2.1373 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346997582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:38 Heat of formation + Delta-G solvation = -32.041701 kcal Electronic energy + Delta-G solvation = -17926.188501 eV Core-core repulsion = 14886.444681 eV Total energy + Delta-G solvation = -3039.743820 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32963 -36.45364 -35.51590 -34.71262 -33.95367 -33.86570 -31.19244 -30.71295 -26.54716 -25.49809 -24.93278 -22.53547 -21.40784 -18.46312 -18.05557 -17.24595 -17.00200 -16.02956 -15.60290 -15.17988 -14.93538 -14.72233 -14.49045 -13.92822 -13.62625 -13.46047 -13.32861 -12.90553 -12.74548 -12.48443 -11.74106 -11.53371 -11.46640 -11.23244 -11.06359 -11.05963 -10.92769 -10.86646 -10.36397 -10.33912 -9.71712 -9.42323 -9.38042 -9.07162 -8.47476 -6.09497 -4.15410 0.14329 0.78225 0.87266 3.16880 3.28423 3.34494 3.37147 3.42752 3.49524 3.85796 4.20775 4.32051 4.39695 4.44590 4.46630 4.51650 4.81582 5.04977 5.16327 5.25615 5.26274 5.38258 5.56781 5.61263 5.66956 5.69805 6.12448 6.48868 6.73179 7.36393 7.41859 7.82501 7.83161 8.19359 8.88126 9.49029 11.01442 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.059274 B = 0.003694 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.268777 B = 7578.722434 C = 7593.413683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.195 4.195 3 C 0.149 3.851 4 N -0.498 5.498 5 C 0.321 3.679 6 C -0.563 4.563 7 S 2.400 3.600 8 O -0.931 6.931 9 O -0.931 6.931 10 C -0.566 4.566 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.889 5.889 16 Si 0.901 3.099 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 N -0.498 5.498 21 C 0.149 3.851 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.173 0.827 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 -0.007 -12.802 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.200 4.200 3 C -0.017 4.017 4 N -0.212 5.212 5 C 0.053 3.947 6 C -0.687 4.687 7 S 2.581 3.419 8 O -0.928 6.928 9 O -0.928 6.928 10 C -0.700 4.700 11 C -0.011 4.011 12 C -0.561 4.561 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.212 5.212 21 C -0.017 4.017 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.190 0.810 26 H 0.173 0.827 27 H 0.173 0.827 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.635 -0.011 -11.886 21.267 hybrid contribution 0.477 0.008 -0.919 1.035 sum -17.158 -0.002 -12.805 21.410 Atomic orbital electron populations 1.20660 0.88799 1.03538 1.03164 1.21805 0.99396 0.95684 1.03098 1.23239 0.89159 0.98538 0.90759 1.68223 1.10305 1.29850 1.12796 1.21709 0.95105 0.84276 0.93562 1.29486 0.95857 1.13030 1.30342 1.09004 0.80599 0.75694 0.76564 1.93565 1.82540 1.45429 1.71267 1.93563 1.82545 1.45468 1.71232 1.30210 1.17945 1.10334 1.11471 1.19011 0.96390 0.99306 0.86359 1.21016 0.89715 1.52279 0.93062 0.91928 1.25068 0.99368 0.94921 0.95126 1.69959 1.35450 1.49485 0.97853 0.86461 0.84661 0.78224 0.77880 1.20464 1.21023 1.19732 1.68225 1.10303 1.29849 1.12796 1.23238 0.89159 0.98537 0.90760 0.90301 0.90804 0.90804 0.80983 0.82733 0.82732 0.85818 0.85824 0.94540 0.94529 0.92526 0.80985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.06 36.01 0.36 -0.17 16 2 C -0.20 -1.82 5.91 -104.35 -0.62 -2.44 16 3 C 0.15 1.65 11.01 -17.20 -0.19 1.46 16 4 N -0.50 -7.40 10.33 -10.72 -0.11 -7.51 16 5 C 0.32 4.99 6.90 -157.19 -1.08 3.91 16 6 C -0.56 -7.80 6.24 36.01 0.22 -7.58 16 7 S 2.40 44.49 4.70 -107.50 -0.51 43.98 16 8 O -0.93 -20.23 18.10 -57.83 -1.05 -21.27 16 9 O -0.93 -20.23 18.10 -57.83 -1.05 -21.28 16 10 C -0.57 -10.69 5.74 37.16 0.21 -10.48 16 11 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 12 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 16 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 N -0.50 -7.40 10.33 -10.73 -0.11 -7.51 16 21 C 0.15 1.65 11.01 -17.20 -0.19 1.46 16 22 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 24 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 25 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 26 H 0.15 1.70 8.14 -51.92 -0.42 1.28 16 27 H 0.15 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 29 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -38.33 307.51 -8.49 -46.81 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.19 Total: -1.65 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -1.83 Total: -26.47 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.51 Total: -41.00 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -2.09 Total: -42.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 44.49 SS G_CDS: -0.51 Total: 43.98 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -38.33 -8.49 -46.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346997582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.772 kcal (2) G-P(sol) polarization free energy of solvation -38.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds