Wall clock time and date at job start Mon Mar 30 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38596 * 120.79970 * 2 1 4 4 N 1.32333 * 119.10260 * 180.02562 * 3 2 1 5 5 C 1.31794 * 120.81891 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.11812 * 179.97438 * 5 4 3 7 7 S 1.81403 * 109.46806 * 90.00671 * 6 5 4 8 8 O 1.42107 * 108.57856 * 294.48034 * 7 6 5 9 9 O 1.42099 * 108.58021 * 65.50740 * 7 6 5 10 10 C 1.81404 * 101.92036 * 179.97438 * 7 6 5 11 11 C 1.53002 * 109.47073 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.46917 * 180.02562 * 11 10 7 13 13 H 1.07996 * 120.00050 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99493 * 180.02562 * 12 11 10 15 15 N 1.31505 * 120.00522 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99707 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47167 * 89.99873 * 16 14 12 18 18 H 1.48498 * 109.47138 * 210.00169 * 16 14 12 19 19 H 1.48499 * 109.46768 * 330.00005 * 16 14 12 20 20 N 1.31794 * 121.75681 * 0.02562 * 5 4 3 21 21 C 1.32338 * 120.81727 * 359.97438 * 20 5 4 22 22 H 1.08996 * 109.46709 * 269.97476 * 1 2 3 23 23 H 1.08994 * 109.47421 * 29.97797 * 1 2 3 24 24 H 1.09006 * 109.46880 * 149.97746 * 1 2 3 25 25 H 1.08003 * 120.44608 * 0.04351 * 3 2 1 26 26 H 1.09002 * 109.46793 * 210.00101 * 6 5 4 27 27 H 1.09002 * 109.47619 * 330.00410 * 6 5 4 28 28 H 1.08994 * 109.47328 * 300.00261 * 10 7 6 29 29 H 1.09003 * 109.47064 * 59.99697 * 10 7 6 30 30 H 1.08999 * 109.46963 * 299.99665 * 11 10 7 31 31 H 1.08998 * 109.46826 * 60.00257 * 11 10 7 32 32 H 0.97002 * 120.00179 * 179.97438 * 15 14 12 33 33 H 1.07992 * 120.44490 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1513 -0.0005 5 6 4.1809 0.0000 -0.0005 6 6 5.6879 0.0001 -0.0017 7 16 6.2938 0.0006 1.7081 8 8 5.9188 1.2267 2.3209 9 8 5.9188 -1.2249 2.3218 10 6 8.0919 -0.0001 1.4684 11 6 8.7881 0.0009 2.8309 12 6 10.2819 0.0009 2.6318 13 1 10.6935 0.0007 1.6333 14 6 11.1229 0.0013 3.7243 15 7 10.6217 0.0021 4.9401 16 14 12.9746 0.0005 3.4775 17 1 13.4657 1.4004 3.4113 18 1 13.6252 -0.6991 4.6143 19 1 13.3048 -0.7003 2.2106 20 7 3.5395 -1.1514 -0.0005 21 6 2.2167 -1.1905 0.0000 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6972 2.1373 0.0007 26 1 6.0508 -0.8901 -0.5155 27 1 6.0508 0.8899 -0.5161 28 1 8.3839 -0.8904 0.9115 29 1 8.3845 0.8895 0.9106 30 1 8.4961 0.8915 3.3874 31 1 8.4956 -0.8885 3.3890 32 1 11.2134 0.0019 5.7087 33 1 1.6973 -2.1373 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346997582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:37 Heat of formation + Delta-G solvation = -62.143611 kcal Electronic energy + Delta-G solvation = -17927.493817 eV Core-core repulsion = 14886.444681 eV Total energy + Delta-G solvation = -3041.049136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.22315 -38.03703 -37.09105 -35.88004 -35.51868 -34.88337 -33.13787 -31.64264 -27.77951 -27.01798 -25.79505 -23.77549 -22.97558 -19.95477 -18.97794 -18.90183 -18.20533 -17.59667 -17.10176 -16.68573 -16.43749 -15.88897 -15.45388 -15.19572 -14.69371 -14.62777 -14.39891 -13.89774 -13.88797 -13.72310 -13.17491 -13.14177 -13.07683 -12.90628 -12.74999 -12.26605 -12.21401 -12.08594 -12.03820 -12.00140 -11.66862 -11.04778 -10.63354 -10.35517 -10.15147 -8.24326 -6.38999 -1.21200 -0.18927 0.01683 1.42334 1.44833 1.55917 1.80222 2.32505 2.40749 2.58214 2.90332 2.92384 3.09132 3.19514 3.58504 3.76102 3.84231 3.96972 3.99184 4.04390 4.20566 4.48983 4.66187 4.79682 4.83044 5.01736 5.10495 5.30262 5.30402 5.39766 5.70237 5.86112 6.06334 6.75742 6.88525 7.31281 8.88284 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.059274 B = 0.003694 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.268777 B = 7578.722434 C = 7593.413683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.173 4.173 3 C 0.130 3.870 4 N -0.524 5.524 5 C 0.281 3.719 6 C -0.531 4.531 7 S 2.403 3.597 8 O -0.976 6.976 9 O -0.976 6.976 10 C -0.565 4.565 11 C 0.019 3.981 12 C -0.539 4.539 13 H 0.082 0.918 14 C -0.007 4.007 15 N -0.937 5.937 16 Si 0.977 3.023 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.255 1.255 20 N -0.524 5.524 21 C 0.130 3.870 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.206 0.794 26 H 0.186 0.814 27 H 0.186 0.814 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.017 -0.012 -15.579 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.177 4.177 3 C -0.035 4.035 4 N -0.239 5.239 5 C 0.013 3.987 6 C -0.661 4.661 7 S 2.591 3.409 8 O -0.973 6.973 9 O -0.973 6.973 10 C -0.697 4.697 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.100 0.900 14 C -0.205 4.205 15 N -0.577 5.577 16 Si 0.800 3.200 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.178 1.178 20 N -0.239 5.239 21 C -0.035 4.035 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.222 0.778 26 H 0.204 0.796 27 H 0.204 0.796 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.499 -0.016 -14.620 23.579 hybrid contribution 0.495 0.011 -0.132 0.513 sum -18.004 -0.005 -14.752 23.276 Atomic orbital electron populations 1.20808 0.85371 1.05497 1.04231 1.22274 1.01587 0.94383 0.99485 1.23947 0.88359 1.00767 0.90460 1.68194 1.12291 1.29876 1.13507 1.21826 0.95584 0.84987 0.96261 1.29116 0.95861 1.16313 1.24818 1.08395 0.79993 0.73963 0.78563 1.93501 1.82881 1.46658 1.74269 1.93499 1.82886 1.46695 1.74236 1.30061 1.18278 1.13442 1.07923 1.18845 0.97022 0.96301 0.89774 1.21574 0.90776 1.51425 0.94008 0.89972 1.26181 1.05222 0.94393 0.94731 1.70124 1.37542 1.50973 0.99015 0.85264 0.77681 0.78643 0.78362 1.19570 1.21005 1.17823 1.68196 1.12289 1.29876 1.13507 1.23947 0.88358 1.00766 0.90461 0.89344 0.88894 0.88894 0.77766 0.79604 0.79599 0.82733 0.82723 0.97781 0.97767 0.92451 0.77769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.06 71.24 0.72 0.08 16 2 C -0.17 -2.77 5.91 -19.69 -0.12 -2.88 16 3 C 0.13 2.61 11.01 84.70 0.93 3.54 16 4 N -0.52 -14.98 10.33 -187.84 -1.94 -16.92 16 5 C 0.28 8.44 6.90 138.75 0.96 9.40 16 6 C -0.53 -13.84 6.24 71.24 0.44 -13.40 16 7 S 2.40 90.80 4.70 -56.49 -0.27 90.53 16 8 O -0.98 -44.21 18.10 -127.37 -2.31 -46.51 16 9 O -0.98 -44.21 18.10 -127.37 -2.30 -46.52 16 10 C -0.56 -21.18 5.74 71.98 0.41 -20.77 16 11 C 0.02 1.03 4.98 29.85 0.15 1.18 16 12 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 13 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 14 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 15 N -0.94 -58.35 13.29 21.44 0.28 -58.07 16 16 Si 0.98 43.67 29.54 68.60 2.03 45.70 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 20 N -0.52 -14.98 10.33 -187.85 -1.94 -16.92 16 21 C 0.13 2.61 11.01 84.70 0.93 3.54 16 22 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.09 0.29 8.10 -2.39 -0.02 0.27 16 24 H 0.09 0.29 8.10 -2.38 -0.02 0.27 16 25 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 26 H 0.19 3.59 8.14 -2.39 -0.02 3.57 16 27 H 0.19 3.59 8.14 -2.39 -0.02 3.57 16 28 H 0.15 4.76 8.14 -2.39 -0.02 4.74 16 29 H 0.15 4.76 8.14 -2.39 -0.02 4.74 16 30 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -88.62 307.51 -0.22 -88.83 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.11 Total: 9.08 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 5.13 Total: -49.20 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -3.60 Total: -91.90 kcal Atomic # 8 Polarization: -88.42 SS G_CDS: -4.61 Total: -93.03 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 90.80 SS G_CDS: -0.27 Total: 90.53 kcal Total: -88.62 -0.22 -88.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346997582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.687 kcal (2) G-P(sol) polarization free energy of solvation -88.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds