Wall clock time and date at job start Mon Mar 30 2020 00:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99848 * 2 1 4 4 H 1.48502 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47411 * 300.00103 * 3 2 1 6 6 H 1.48504 * 109.47088 * 60.00546 * 3 2 1 7 7 C 1.37880 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46765 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47097 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47464 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99574 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00118 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99635 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47028 * 179.97438 * 15 14 12 17 17 C 1.33369 * 122.72431 * 94.99438 * 16 15 14 18 18 S 1.76171 * 108.06076 * 180.02562 * 17 16 15 19 19 C 1.70965 * 90.34140 * 0.02562 * 18 17 16 20 20 O 1.35547 * 124.94541 * 180.02562 * 19 18 17 21 21 N 1.29514 * 110.11868 * 359.97438 * 19 18 17 22 22 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47807 * 59.99763 * 9 7 2 24 24 H 1.09000 * 109.47136 * 299.99741 * 9 7 2 25 25 H 1.09004 * 109.47600 * 60.00027 * 10 9 7 26 26 H 1.09000 * 109.47149 * 299.99815 * 10 9 7 27 27 H 1.08995 * 109.47322 * 59.99938 * 11 10 9 28 28 H 1.09000 * 109.47288 * 300.00119 * 11 10 9 29 29 H 0.96995 * 119.99921 * 359.97438 * 14 12 11 30 30 H 1.08991 * 109.47679 * 59.99607 * 15 14 12 31 31 H 1.09008 * 109.46807 * 299.99300 * 15 14 12 32 32 H 1.07998 * 125.97220 * 0.04981 * 17 16 15 33 33 H 0.96700 * 114.00020 * 269.97429 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 6 2.4596 -6.1326 -0.0037 13 8 3.6519 -5.9109 -0.0040 14 7 2.0103 -7.4033 -0.0047 15 6 2.9624 -8.5167 -0.0045 16 6 2.2089 -9.8218 -0.0052 17 6 1.9335 -10.4948 -1.1232 18 16 1.0469 -11.9511 -0.6797 19 6 1.1319 -11.5127 0.9705 20 8 0.6113 -12.2340 1.9933 21 7 1.7668 -10.3915 1.1015 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5564 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8720 -3.6051 0.8873 26 1 2.8719 -3.6035 -0.8927 27 1 0.8533 -5.0443 -0.8930 28 1 0.8539 -5.0454 0.8869 29 1 1.0567 -7.5805 -0.0048 30 1 3.5883 -8.4595 0.8859 31 1 3.5897 -8.4585 -0.8941 32 1 2.2067 -10.1989 -2.1253 33 1 -0.3017 -12.0031 2.2127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349824463.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:00 Heat of formation + Delta-G solvation = -42.988218 kcal Electronic energy + Delta-G solvation = -17130.001793 eV Core-core repulsion = 14089.783296 eV Total energy + Delta-G solvation = -3040.218496 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65396 -39.33674 -37.90265 -34.69918 -34.11021 -32.04484 -30.73473 -28.33508 -26.80523 -24.68002 -23.48349 -20.66176 -20.64406 -19.85886 -19.60388 -17.87948 -16.89377 -16.39272 -16.07464 -15.92056 -15.42985 -14.77318 -14.41959 -14.01606 -13.91271 -13.74329 -13.22459 -12.70047 -12.26280 -12.21009 -11.88559 -11.73368 -11.30644 -10.80538 -10.58240 -10.50076 -10.10228 -9.94982 -9.79776 -9.65786 -9.38437 -9.17530 -9.06433 -8.96389 -8.30689 -5.96241 -3.97372 0.07869 0.59513 1.13747 2.02372 2.92254 3.07387 3.34948 3.42070 3.45534 3.48932 4.24062 4.50975 4.63115 4.78629 5.08380 5.33616 5.39991 5.43307 5.62105 5.74147 5.74766 6.26962 6.39230 6.58697 6.75380 6.95660 7.16475 7.18759 7.56758 7.73395 7.85938 8.04858 8.43448 8.49097 9.10116 9.66593 11.15355 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048609 B = 0.002604 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.887405 B =10748.862764 C =10915.970912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.515 3.485 13 O -0.536 6.536 14 N -0.735 5.735 15 C 0.195 3.805 16 C 0.067 3.933 17 C -0.232 4.232 18 S 0.134 5.866 19 C 0.225 3.775 20 O -0.437 6.437 21 N -0.474 5.474 22 H 0.259 0.741 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.400 0.600 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.187 0.813 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -27.085 -1.998 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.303 3.697 13 O -0.412 6.412 14 N -0.389 5.389 15 C 0.069 3.931 16 C -0.065 4.065 17 C -0.372 4.372 18 S 0.382 5.618 19 C -0.092 4.092 20 O -0.244 6.244 21 N -0.200 5.200 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.204 0.796 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.120 -27.778 -1.913 27.867 hybrid contribution -0.181 1.609 0.184 1.629 sum -1.301 -26.170 -1.728 26.259 Atomic orbital electron populations 1.69973 1.06042 1.26408 1.51375 1.25026 0.94856 0.99267 0.95426 0.86539 0.80252 0.83761 0.77500 1.19670 1.21061 1.21049 1.21320 0.93248 0.91006 1.49911 0.92499 1.19139 0.93984 0.91489 0.97122 1.21452 0.98642 0.91479 1.01748 1.21845 0.98113 0.93953 1.03802 1.21285 0.90457 0.83403 0.74547 1.90685 1.17296 1.84593 1.48596 1.46096 1.09885 1.05295 1.77640 1.19690 0.90280 0.79207 1.03915 1.19919 1.01618 0.98766 0.86206 1.26915 1.08234 0.97562 1.04494 1.84310 1.51556 1.23114 1.02778 1.24414 1.01095 0.92218 0.91511 1.84877 1.34184 1.56697 1.48608 1.66355 1.12709 1.08701 1.32238 0.93144 0.96614 0.96596 0.92654 0.92654 0.89323 0.89318 0.76610 0.89691 0.89506 0.79557 0.73423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.27 5.70 -27.88 -0.16 -2.42 16 12 C 0.51 8.24 7.83 -10.98 -0.09 8.16 16 13 O -0.54 -10.67 15.98 5.56 0.09 -10.58 16 14 N -0.73 -8.81 5.55 -61.47 -0.34 -9.15 16 15 C 0.20 2.16 6.11 -5.20 -0.03 2.12 16 16 C 0.07 0.64 6.11 -84.19 -0.51 0.13 16 17 C -0.23 -1.67 11.09 29.03 0.32 -1.35 16 18 S 0.13 0.85 23.22 -107.50 -2.50 -1.65 16 19 C 0.23 1.94 8.64 51.79 0.45 2.39 16 20 O -0.44 -3.04 13.64 -18.34 -0.25 -3.29 16 21 N -0.47 -5.17 10.58 -12.15 -0.13 -5.30 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 26 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.40 3.91 8.46 -40.82 -0.35 3.57 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 0.89 8.10 -51.92 -0.42 0.47 16 32 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.41 0.71 9.06 45.56 0.41 1.12 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -35.93 309.21 -6.71 -42.64 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.27 Total: -1.32 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.69 Total: -6.63 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.27 Total: -40.93 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.16 Total: -13.87 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.93 -6.71 -42.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349824463.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.349 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds