Wall clock time and date at job start Mon Mar 30 2020 00:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99848 * 2 1 4 4 H 1.48502 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47411 * 300.00103 * 3 2 1 6 6 H 1.48504 * 109.47088 * 60.00546 * 3 2 1 7 7 C 1.37880 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46765 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47097 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47464 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99574 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00118 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99635 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47028 * 179.97438 * 15 14 12 17 17 C 1.33369 * 122.72431 * 94.99438 * 16 15 14 18 18 S 1.76171 * 108.06076 * 180.02562 * 17 16 15 19 19 C 1.70965 * 90.34140 * 0.02562 * 18 17 16 20 20 O 1.35547 * 124.94541 * 180.02562 * 19 18 17 21 21 N 1.29514 * 110.11868 * 359.97438 * 19 18 17 22 22 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47807 * 59.99763 * 9 7 2 24 24 H 1.09000 * 109.47136 * 299.99741 * 9 7 2 25 25 H 1.09004 * 109.47600 * 60.00027 * 10 9 7 26 26 H 1.09000 * 109.47149 * 299.99815 * 10 9 7 27 27 H 1.08995 * 109.47322 * 59.99938 * 11 10 9 28 28 H 1.09000 * 109.47288 * 300.00119 * 11 10 9 29 29 H 0.96995 * 119.99921 * 359.97438 * 14 12 11 30 30 H 1.08991 * 109.47679 * 59.99607 * 15 14 12 31 31 H 1.09008 * 109.46807 * 299.99300 * 15 14 12 32 32 H 1.07998 * 125.97220 * 0.04981 * 17 16 15 33 33 H 0.96700 * 114.00020 * 269.97429 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 6 2.4596 -6.1326 -0.0037 13 8 3.6519 -5.9109 -0.0040 14 7 2.0103 -7.4033 -0.0047 15 6 2.9624 -8.5167 -0.0045 16 6 2.2089 -9.8218 -0.0052 17 6 1.9335 -10.4948 -1.1232 18 16 1.0469 -11.9511 -0.6797 19 6 1.1319 -11.5127 0.9705 20 8 0.6113 -12.2340 1.9933 21 7 1.7668 -10.3915 1.1015 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5564 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8720 -3.6051 0.8873 26 1 2.8719 -3.6035 -0.8927 27 1 0.8533 -5.0443 -0.8930 28 1 0.8539 -5.0454 0.8869 29 1 1.0567 -7.5805 -0.0048 30 1 3.5883 -8.4595 0.8859 31 1 3.5897 -8.4585 -0.8941 32 1 2.2067 -10.1989 -2.1253 33 1 -0.3017 -12.0031 2.2127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349824463.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:59 Heat of formation + Delta-G solvation = -73.180162 kcal Electronic energy + Delta-G solvation = -17131.311014 eV Core-core repulsion = 14089.783296 eV Total energy + Delta-G solvation = -3041.527717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37040 -40.51377 -38.47033 -36.19818 -35.62606 -34.01636 -31.59132 -29.86191 -27.93524 -25.82452 -24.92328 -22.31348 -21.43931 -21.06461 -20.26765 -18.73160 -18.37941 -17.76417 -17.08498 -16.93990 -16.71989 -16.46323 -15.38459 -15.25270 -14.97073 -14.60379 -14.31907 -14.12481 -13.95161 -13.72360 -13.07093 -12.75755 -12.61964 -12.51340 -12.47192 -12.35192 -11.53876 -11.46489 -11.24878 -10.87029 -10.70000 -10.53797 -10.51709 -10.15755 -9.85765 -8.19630 -6.29297 -0.47859 0.06094 0.56272 1.32826 1.40029 1.40424 1.54292 1.65306 2.37811 2.44514 2.56375 3.13436 3.61194 3.90898 4.00322 4.23342 4.26902 4.29259 4.53439 4.64279 4.83307 4.87161 4.99337 5.12679 5.20710 5.35588 5.56204 5.77357 5.88477 6.25745 6.28683 6.50357 6.60105 6.86573 7.23901 7.39398 8.92151 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048609 B = 0.002604 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.887405 B =10748.862764 C =10915.970912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.129 4.129 12 C 0.520 3.480 13 O -0.581 6.581 14 N -0.714 5.714 15 C 0.198 3.802 16 C 0.047 3.953 17 C -0.224 4.224 18 S 0.197 5.803 19 C 0.210 3.790 20 O -0.448 6.448 21 N -0.515 5.515 22 H 0.264 0.736 23 H 0.003 0.997 24 H 0.000 1.000 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.414 0.586 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.211 0.789 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 -28.231 -2.874 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.169 4.169 12 C 0.308 3.692 13 O -0.461 6.461 14 N -0.367 5.367 15 C 0.072 3.928 16 C -0.085 4.085 17 C -0.364 4.364 18 S 0.446 5.554 19 C -0.107 4.107 20 O -0.258 6.258 21 N -0.242 5.242 22 H 0.073 0.927 23 H 0.021 0.979 24 H 0.018 0.982 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.250 0.750 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.228 0.772 33 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -1.656 -28.975 -2.782 29.155 hybrid contribution -0.107 1.842 0.447 1.899 sum -1.763 -27.133 -2.336 27.290 Atomic orbital electron populations 1.70072 1.07491 1.27709 1.51742 1.25909 0.95830 1.03074 0.94734 0.85448 0.78901 0.79010 0.77999 1.19228 1.20009 1.20134 1.21734 0.93364 0.92829 1.50501 0.93054 1.19026 0.94222 0.92385 0.95548 1.21169 0.97639 0.92909 1.00395 1.21674 0.97889 0.91561 1.05771 1.21040 0.89441 0.84442 0.74302 1.90673 1.18912 1.85366 1.51119 1.45867 1.10932 1.04352 1.75555 1.19658 0.90124 0.79655 1.03374 1.19614 1.03269 0.98648 0.86922 1.27244 1.06728 0.97578 1.04880 1.84125 1.49857 1.21358 1.00060 1.24613 1.01065 0.92003 0.93016 1.84830 1.35873 1.56494 1.48624 1.66281 1.14123 1.10286 1.33539 0.92674 0.97901 0.98184 0.94232 0.93787 0.87030 0.87694 0.75024 0.91780 0.88554 0.77231 0.71110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.55 -32.32 9.11 25.60 0.23 -32.08 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.08 -3.66 4.44 30.59 0.14 -3.52 16 11 C -0.13 -4.17 5.70 29.85 0.17 -4.00 16 12 C 0.52 16.37 7.83 87.66 0.69 17.06 16 13 O -0.58 -23.41 15.98 -3.02 -0.05 -23.46 16 14 N -0.71 -16.31 5.55 -466.79 -2.59 -18.90 16 15 C 0.20 4.24 6.11 85.63 0.52 4.77 16 16 C 0.05 0.84 6.11 41.42 0.25 1.09 16 17 C -0.22 -2.64 11.09 66.72 0.74 -1.90 16 18 S 0.20 1.95 23.22 -56.49 -1.31 0.64 16 19 C 0.21 3.30 8.64 130.58 1.13 4.43 16 20 O -0.45 -5.64 13.64 -88.52 -1.21 -6.85 16 21 N -0.52 -10.79 10.58 -306.65 -3.24 -14.03 16 22 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 23 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 24 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 26 H 0.04 2.01 8.10 -2.39 -0.02 1.99 16 27 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.41 7.32 8.46 -92.71 -0.78 6.54 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 1.88 8.10 -2.38 -0.02 1.86 16 32 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.43 0.90 9.06 -74.06 -0.67 0.22 16 Total: -1.00 -78.11 309.21 -1.92 -80.02 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -0.31 Total: 3.54 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.48 Total: -12.07 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -5.55 Total: -89.26 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.26 Total: -30.30 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.31 Total: 0.64 kcal Total: -78.11 -1.92 -80.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349824463.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.843 kcal (2) G-P(sol) polarization free energy of solvation -78.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds