Wall clock time and date at job start Mon Mar 30 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21642 * 120.00005 * 0.02562 * 14 13 3 16 16 C 1.47137 * 119.99877 * 179.97438 * 14 13 3 17 17 N 1.30723 * 125.50374 * 0.02631 * 16 14 13 18 18 C 1.30865 * 115.87676 * 179.97438 * 17 16 14 19 19 O 1.36054 * 122.17062 * 179.97438 * 18 17 16 20 20 C 1.34674 * 115.66218 * 0.02562 * 18 17 16 21 21 C 1.50700 * 125.45272 * 180.02562 * 20 18 17 22 22 S 1.71061 * 109.10078 * 359.74904 * 20 18 17 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 30 30 H 0.96708 * 113.99962 * 90.02921 * 19 18 17 31 31 H 1.09002 * 109.46763 * 90.00349 * 21 20 18 32 32 H 1.08998 * 109.47430 * 209.99807 * 21 20 18 33 33 H 1.09003 * 109.46894 * 330.00375 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3419 2.6318 0.4317 16 6 0.0457 3.3216 2.6245 17 7 0.7922 3.4187 3.6932 18 6 0.2561 4.0453 4.7094 19 8 0.9190 4.2193 5.8847 20 6 -0.9947 4.5058 4.5167 21 6 -1.8165 5.2555 5.5333 22 16 -1.4986 4.1102 2.9305 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 2.2719 2.1231 1.9979 30 1 1.4383 5.0341 5.9265 31 1 -1.6338 6.3252 5.4306 32 1 -2.8741 5.0502 5.3684 33 1 -1.5358 4.9336 6.5362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351763967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:55 Heat of formation + Delta-G solvation = -38.216144 kcal Electronic energy + Delta-G solvation = -18356.248638 eV Core-core repulsion = 15316.237074 eV Total energy + Delta-G solvation = -3040.011564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40029 -38.94467 -36.44914 -35.13988 -32.74322 -32.28998 -30.94419 -27.86185 -26.50390 -24.91427 -23.09930 -21.83134 -20.01605 -19.31890 -18.39681 -17.66603 -17.26780 -15.89976 -15.72968 -15.28261 -14.72206 -14.37492 -13.82755 -13.54675 -13.35021 -13.04103 -12.87011 -12.69055 -12.18507 -11.98912 -11.53840 -11.27022 -11.07327 -11.00638 -10.83767 -10.37764 -10.22517 -10.06476 -9.67636 -9.51575 -9.35814 -9.07946 -8.65818 -8.52733 -7.91885 -6.13847 -4.23126 0.22150 1.09013 1.59045 2.25523 3.25409 3.32150 3.34646 3.48524 3.64489 4.08830 4.36552 4.61282 4.77303 5.12832 5.18245 5.21294 5.42768 5.62386 5.82625 6.37279 6.43418 6.62058 7.01953 7.13054 7.22384 7.27367 7.34575 7.46930 7.60314 7.70428 7.85519 8.13389 8.53634 8.69958 8.95649 9.43509 10.91610 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028133 B = 0.004878 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.034641 B = 5738.262461 C = 6410.991812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.578 3.422 15 O -0.534 6.534 16 C 0.020 3.980 17 N -0.442 5.442 18 C 0.237 3.763 19 O -0.462 6.462 20 C -0.285 4.285 21 C -0.069 4.069 22 S 0.257 5.743 23 H 0.036 0.964 24 H 0.025 0.975 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.103 0.897 28 H 0.265 0.735 29 H 0.400 0.600 30 H 0.393 0.607 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 8.739 12.683 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.320 5.320 14 C 0.358 3.642 15 O -0.412 6.412 16 C -0.256 4.256 17 N -0.167 5.167 18 C 0.059 3.941 19 O -0.267 6.267 20 C -0.409 4.409 21 C -0.128 4.128 22 S 0.512 5.488 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.234 0.766 30 H 0.248 0.752 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.553 7.999 11.369 16.867 hybrid contribution 2.142 0.479 1.184 2.494 sum -7.411 8.478 12.554 16.864 Atomic orbital electron populations 1.21857 0.98306 0.98330 1.01151 1.21959 0.92670 0.99483 1.02643 1.18982 0.94641 0.89368 0.80283 0.92778 1.21213 0.90412 1.39262 1.06445 0.91871 1.24865 0.98718 0.94688 0.95263 1.69884 1.35193 1.37510 1.09352 0.86425 0.84698 0.78530 0.77340 1.20493 1.21057 1.19821 1.46418 1.13398 1.53123 1.19060 1.16709 0.84013 0.79755 0.83766 1.90844 1.51618 1.60704 1.38035 1.27883 0.94837 1.05385 0.97544 1.66425 1.34708 1.16171 0.99416 1.17746 0.89328 0.99956 0.87117 1.84933 1.66183 1.47049 1.28564 1.25697 1.01450 1.10406 1.03338 1.20144 0.97917 0.98650 0.96070 1.83978 1.16390 1.46762 1.01713 0.94500 0.95564 0.92938 0.94753 0.87933 0.92492 0.76574 0.75211 0.90517 0.90917 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 13 N -0.67 -14.66 5.02 -56.10 -0.28 -14.94 16 14 C 0.58 11.94 6.37 -12.65 -0.08 11.86 16 15 O -0.53 -12.11 14.07 5.24 0.07 -12.03 16 16 C 0.02 0.35 7.45 -14.41 -0.11 0.24 16 17 N -0.44 -7.43 10.25 -11.61 -0.12 -7.55 16 18 C 0.24 3.34 7.74 -19.23 -0.15 3.19 16 19 O -0.46 -5.51 13.26 -19.91 -0.26 -5.77 16 20 C -0.28 -3.38 6.38 -35.57 -0.23 -3.61 16 21 C -0.07 -0.55 10.21 36.01 0.37 -0.18 16 22 S 0.26 3.39 22.99 -107.50 -2.47 0.92 16 23 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.40 8.22 8.19 -40.82 -0.33 7.88 16 30 H 0.39 2.75 9.07 45.56 0.41 3.16 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.63 7.98 -51.93 -0.41 0.21 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -30.42 296.98 -6.53 -36.95 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -2.97 Total: 6.81 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.58 Total: -0.67 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.23 Total: -46.25 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.19 Total: -17.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.47 Total: 0.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.42 -6.53 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351763967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.269 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds