Wall clock time and date at job start Mon Mar 30 2020 01:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21642 * 120.00005 * 0.02562 * 14 13 3 16 16 C 1.47137 * 119.99877 * 179.97438 * 14 13 3 17 17 N 1.30723 * 125.50374 * 0.02631 * 16 14 13 18 18 C 1.30865 * 115.87676 * 179.97438 * 17 16 14 19 19 O 1.36054 * 122.17062 * 179.97438 * 18 17 16 20 20 C 1.34674 * 115.66218 * 0.02562 * 18 17 16 21 21 C 1.50700 * 125.45272 * 180.02562 * 20 18 17 22 22 S 1.71061 * 109.10078 * 359.74904 * 20 18 17 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 30 30 H 0.96708 * 113.99962 * 90.02921 * 19 18 17 31 31 H 1.09002 * 109.46763 * 90.00349 * 21 20 18 32 32 H 1.08998 * 109.47430 * 209.99807 * 21 20 18 33 33 H 1.09003 * 109.46894 * 330.00375 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3419 2.6318 0.4317 16 6 0.0457 3.3216 2.6245 17 7 0.7922 3.4187 3.6932 18 6 0.2561 4.0453 4.7094 19 8 0.9190 4.2193 5.8847 20 6 -0.9947 4.5058 4.5167 21 6 -1.8165 5.2555 5.5333 22 16 -1.4986 4.1102 2.9305 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 2.2719 2.1231 1.9979 30 1 1.4383 5.0341 5.9265 31 1 -1.6338 6.3252 5.4306 32 1 -2.8741 5.0502 5.3684 33 1 -1.5358 4.9336 6.5362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351763967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:54 Heat of formation + Delta-G solvation = -63.256191 kcal Electronic energy + Delta-G solvation = -18357.334456 eV Core-core repulsion = 15316.237074 eV Total energy + Delta-G solvation = -3041.097382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55449 -40.51638 -37.48367 -36.99369 -34.36858 -33.54242 -32.72577 -29.45845 -28.04405 -25.95418 -24.98430 -23.17929 -21.70075 -20.95629 -19.51885 -19.02195 -18.53134 -17.56245 -17.24470 -16.84879 -16.28392 -16.14655 -15.07390 -14.77189 -14.63761 -14.30917 -14.06664 -13.95655 -13.61801 -13.36884 -13.18806 -12.99723 -12.89869 -12.67669 -12.20698 -12.09629 -12.02979 -11.63460 -11.44570 -11.08107 -10.81493 -10.55117 -10.54792 -9.87370 -9.59891 -8.17393 -6.34500 -0.92646 -0.01992 0.51675 1.10952 1.45343 1.45384 1.56183 2.11808 2.24471 2.43188 2.79687 3.12102 3.60071 3.85555 3.93198 4.48729 4.55785 4.60167 4.68365 4.73297 4.80812 5.04359 5.13886 5.23696 5.40336 5.45921 5.57298 5.74654 5.83664 6.12710 6.24688 6.61090 6.69574 6.81101 7.21371 7.39469 8.88071 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028133 B = 0.004878 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.034641 B = 5738.262461 C = 6410.991812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.012 0.988 5 C -0.553 4.553 6 H 0.066 0.934 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.679 5.679 14 C 0.581 3.419 15 O -0.563 6.563 16 C -0.037 4.037 17 N -0.455 5.455 18 C 0.213 3.787 19 O -0.466 6.466 20 C -0.253 4.253 21 C -0.073 4.073 22 S 0.312 5.688 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.267 0.733 29 H 0.405 0.595 30 H 0.413 0.587 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 9.916 14.872 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.030 0.970 5 C -0.591 4.591 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.326 5.326 14 C 0.364 3.636 15 O -0.443 6.443 16 C -0.310 4.310 17 N -0.182 5.182 18 C 0.035 3.965 19 O -0.274 6.274 20 C -0.378 4.378 21 C -0.131 4.131 22 S 0.566 5.434 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.240 0.760 30 H 0.271 0.729 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.112 9.191 13.579 19.264 hybrid contribution 2.188 0.247 0.646 2.295 sum -7.923 9.438 14.225 18.821 Atomic orbital electron populations 1.21700 0.96685 0.99539 1.00372 1.21810 0.94067 0.98759 1.01491 1.18583 0.94012 0.89459 0.80528 0.97019 1.21512 0.91236 1.39478 1.06839 0.91588 1.25698 1.03261 0.94169 0.94823 1.70017 1.37027 1.38018 1.09792 0.85377 0.79113 0.78761 0.77283 1.19738 1.20811 1.19250 1.46175 1.14451 1.53938 1.18080 1.17017 0.82966 0.78838 0.84819 1.90807 1.52203 1.61713 1.39624 1.26994 0.97911 1.09392 0.96748 1.66332 1.35786 1.16181 0.99873 1.17869 0.90390 1.01009 0.87261 1.84908 1.66476 1.48690 1.27313 1.26312 1.00614 1.07640 1.03236 1.20423 0.98188 0.99493 0.95021 1.83761 1.13161 1.44517 1.01968 0.94278 0.93224 0.94635 0.94424 0.90293 0.92382 0.75990 0.72899 0.87937 0.89063 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.96 16 3 C 0.28 14.53 2.24 44.24 0.10 14.63 16 4 H 0.01 0.72 7.58 -2.39 -0.02 0.70 16 5 C -0.55 -29.99 8.73 25.60 0.22 -29.77 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.14 5.29 84.66 0.45 1.59 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16 9 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.68 -30.69 5.02 -449.65 -2.26 -32.95 16 14 C 0.58 24.73 6.37 86.58 0.55 25.28 16 15 O -0.56 -26.46 14.07 -4.16 -0.06 -26.52 16 16 C -0.04 -1.27 7.45 87.20 0.65 -0.62 16 17 N -0.46 -15.02 10.25 -303.98 -3.12 -18.14 16 18 C 0.21 5.56 7.74 84.02 0.65 6.21 16 19 O -0.47 -9.97 13.26 -94.17 -1.25 -11.22 16 20 C -0.25 -5.21 6.38 24.87 0.16 -5.05 16 21 C -0.07 -0.81 10.21 71.24 0.73 -0.09 16 22 S 0.31 7.61 22.99 -56.49 -1.30 6.31 16 23 H 0.04 1.72 5.64 -2.39 -0.01 1.71 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.03 1.69 7.84 -2.38 -0.02 1.67 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 4.35 5.95 -2.39 -0.01 4.33 16 28 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.41 17.21 8.19 -92.71 -0.76 16.45 16 30 H 0.41 4.71 9.07 -74.05 -0.67 4.04 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.98 7.98 -2.39 -0.02 0.96 16 Total: -1.00 -67.59 296.98 -1.69 -69.28 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.26 Total: 18.96 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 4.29 Total: 1.16 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -5.13 Total: -102.55 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.31 Total: -37.74 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 7.61 SS G_CDS: -1.30 Total: 6.31 kcal Total: -67.59 -1.69 -69.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351763967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.024 kcal (2) G-P(sol) polarization free energy of solvation -67.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds