Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46871 * 2 1 4 4 C 1.50698 * 109.46984 * 119.99882 * 2 1 3 5 5 N 1.31221 * 124.06715 * 299.70493 * 4 2 1 6 6 N 1.27333 * 120.04900 * 179.73197 * 5 4 2 7 7 S 1.56632 * 109.75416 * 0.52138 * 6 5 4 8 8 C 1.38329 * 124.06232 * 119.99901 * 4 2 1 9 9 C 1.47020 * 128.47785 * 0.02562 * 8 4 2 10 10 O 1.21552 * 120.00190 * 359.97438 * 9 8 4 11 11 O 1.34800 * 120.00042 * 179.97438 * 9 8 4 12 12 C 1.45201 * 117.00314 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47273 * 29.99298 * 12 11 9 14 14 C 1.53009 * 109.46837 * 269.99934 * 12 11 9 15 15 C 1.50695 * 109.47441 * 149.99961 * 12 11 9 16 16 H 1.07996 * 120.00115 * 5.45650 * 15 12 11 17 17 C 1.37884 * 120.00063 * 185.46359 * 15 12 11 18 18 N 1.31515 * 119.99686 * 9.54331 * 17 15 12 19 19 Si 1.86803 * 119.99920 * 189.54911 * 17 15 12 20 20 H 1.48501 * 109.47152 * 84.98974 * 19 17 15 21 21 H 1.48499 * 109.46681 * 204.99059 * 19 17 15 22 22 H 1.48500 * 109.46922 * 324.99216 * 19 17 15 23 23 H 1.09003 * 109.47088 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47189 * 59.99763 * 1 2 3 25 25 H 1.08999 * 109.47207 * 299.99660 * 1 2 3 26 26 H 1.08999 * 109.47207 * 240.00340 * 2 1 3 27 27 H 1.09004 * 109.47380 * 60.00256 * 3 2 1 28 28 H 1.08998 * 109.47096 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47407 * 300.00103 * 3 2 1 30 30 H 1.09003 * 109.46669 * 183.66466 * 14 12 11 31 31 H 1.08997 * 109.46887 * 303.66067 * 14 12 11 32 32 H 1.08996 * 109.46868 * 63.66068 * 14 12 11 33 33 H 0.97007 * 119.99482 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7695 -0.3290 2.4582 6 7 2.2303 -0.9904 3.4438 7 16 3.0827 -2.1958 2.9203 8 6 2.8308 -1.8396 1.2015 9 6 3.3453 -2.5664 0.0316 10 8 3.0743 -2.1830 -1.0896 11 8 4.1176 -3.6579 0.2024 12 6 4.5897 -4.3257 -0.9974 13 1 4.7023 -3.5959 -1.7991 14 6 3.5778 -5.3935 -1.4184 15 6 5.9203 -4.9764 -0.7197 16 1 6.3251 -4.9719 0.2815 17 6 6.6210 -5.5772 -1.7440 18 7 6.2270 -5.4229 -2.9892 19 14 8.1299 -6.6105 -1.3629 20 1 7.7101 -7.9951 -1.0284 21 1 9.0239 -6.6369 -2.5483 22 1 8.8550 -6.0207 -0.2089 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.9624 -5.9386 -2.2804 31 1 3.4163 -6.0865 -0.5928 32 1 2.6341 -4.9159 -1.6818 33 1 6.7198 -5.8460 -3.7097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357526620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = -31.414148 kcal Electronic energy + Delta-G solvation = -18468.909375 eV Core-core repulsion = 15429.192768 eV Total energy + Delta-G solvation = -3039.716607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04210 -39.48472 -36.17758 -35.34317 -33.35009 -31.32438 -29.79689 -27.49312 -27.16838 -25.39583 -23.94102 -22.10372 -21.07821 -19.85662 -17.95782 -17.34292 -16.50512 -15.99158 -15.86898 -15.19295 -14.93072 -14.56162 -14.20578 -13.35206 -13.16938 -12.86634 -12.53958 -12.31107 -12.19108 -12.02625 -11.46473 -11.31161 -11.28989 -11.13788 -10.98026 -10.86880 -10.59685 -10.38067 -10.28276 -9.83564 -9.78659 -9.72761 -9.66905 -9.09308 -8.57733 -6.29597 -4.34205 -0.24402 0.89840 1.54403 1.94466 3.08301 3.17521 3.20448 3.27035 3.33721 3.88116 4.26049 4.48269 4.96432 5.04941 5.10601 5.11981 5.46593 5.63422 5.66207 5.81431 5.86720 6.01776 6.20378 6.32063 6.46970 6.68275 6.71472 6.88899 7.41281 7.51077 7.66062 7.70948 7.96511 8.34260 8.74468 9.30310 10.79647 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.005097 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.418050 B = 5492.399480 C = 6081.919212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 C -0.141 4.141 4 C 0.105 3.895 5 N -0.250 5.250 6 N -0.271 5.271 7 S 0.461 5.539 8 C -0.268 4.268 9 C 0.540 3.460 10 O -0.491 6.491 11 O -0.346 6.346 12 C 0.215 3.785 13 H 0.058 0.942 14 C -0.151 4.151 15 C -0.528 4.528 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.910 3.090 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.271 1.271 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.022 0.978 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.833 7.492 7.245 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 C -0.198 4.198 4 C -0.043 4.043 5 N -0.115 5.115 6 N -0.252 5.252 7 S 0.598 5.402 8 C -0.407 4.407 9 C 0.381 3.619 10 O -0.381 6.381 11 O -0.262 6.262 12 C 0.164 3.836 13 H 0.076 0.924 14 C -0.209 4.209 15 C -0.565 4.565 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.521 5.521 19 Si 0.736 3.264 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.196 1.196 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.141 0.859 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.804 7.475 8.700 13.873 hybrid contribution 0.665 -0.457 -1.401 1.617 sum -7.139 7.018 7.299 12.389 Atomic orbital electron populations 1.21795 0.93205 1.02241 1.02553 1.20181 0.96632 0.96225 0.92247 1.21796 1.01322 0.94177 1.02539 1.22957 0.94598 0.92326 0.94416 1.70567 1.20507 1.24498 0.95923 1.78713 1.13984 1.07883 1.24603 1.82835 1.37221 1.26096 0.94077 1.27007 1.10150 1.03675 0.99862 1.19021 0.77152 0.80065 0.85683 1.90770 1.56091 1.66858 1.24395 1.86589 1.59153 1.37029 1.43436 1.20805 0.92583 0.90304 0.79957 0.92427 1.22114 0.96991 0.99775 1.01988 1.20939 1.02471 1.36888 0.96232 0.91113 1.24892 0.97957 0.96343 0.94459 1.69981 1.40889 1.42492 0.98785 0.86322 0.81505 0.80524 0.78029 1.20148 1.20999 1.19585 0.92618 0.91424 0.91907 0.85925 0.91904 0.92540 0.91422 0.89634 0.93990 0.95853 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.16 37.16 0.34 -1.25 16 2 C -0.03 -0.42 3.25 -91.77 -0.30 -0.72 16 3 C -0.14 -1.62 9.16 37.16 0.34 -1.28 16 4 C 0.10 1.60 5.53 -82.82 -0.46 1.14 16 5 N -0.25 -3.80 11.51 33.43 0.38 -3.42 16 6 N -0.27 -3.98 12.51 60.35 0.75 -3.22 16 7 S 0.46 6.36 23.63 -107.50 -2.54 3.82 16 8 C -0.27 -4.47 6.83 -35.99 -0.25 -4.72 16 9 C 0.54 10.92 7.92 34.29 0.27 11.19 16 10 O -0.49 -10.71 13.81 -19.31 -0.27 -10.97 16 11 O -0.35 -7.76 9.87 -40.76 -0.40 -8.17 16 12 C 0.22 5.46 2.43 -27.88 -0.07 5.40 16 13 H 0.06 1.62 7.10 -51.93 -0.37 1.25 16 14 C -0.15 -3.55 9.43 37.16 0.35 -3.20 16 15 C -0.53 -14.13 8.82 -34.44 -0.30 -14.43 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C 0.07 1.77 5.17 -17.82 -0.09 1.68 16 18 N -0.88 -24.39 12.16 55.43 0.67 -23.72 16 19 Si 0.91 20.33 29.55 -169.99 -5.02 15.30 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.12 1.89 5.50 -51.93 -0.29 1.61 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 2.14 6.83 -51.93 -0.35 1.79 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 302.76 15.07 4.56 4.56 Total: -1.00 -28.41 302.76 -5.96 -34.36 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -3.94 Total: -2.35 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.16 Total: -6.19 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 1.81 Total: -30.36 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.67 Total: -19.14 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -2.54 Total: 3.82 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.41 -5.96 -34.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357526620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.947 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds