Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46871 * 2 1 4 4 C 1.50698 * 109.46984 * 119.99882 * 2 1 3 5 5 N 1.31221 * 124.06715 * 299.70493 * 4 2 1 6 6 N 1.27333 * 120.04900 * 179.73197 * 5 4 2 7 7 S 1.56632 * 109.75416 * 0.52138 * 6 5 4 8 8 C 1.38329 * 124.06232 * 119.99901 * 4 2 1 9 9 C 1.47020 * 128.47785 * 0.02562 * 8 4 2 10 10 O 1.21552 * 120.00190 * 359.97438 * 9 8 4 11 11 O 1.34800 * 120.00042 * 179.97438 * 9 8 4 12 12 C 1.45201 * 117.00314 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47273 * 29.99298 * 12 11 9 14 14 C 1.53009 * 109.46837 * 269.99934 * 12 11 9 15 15 C 1.50695 * 109.47441 * 149.99961 * 12 11 9 16 16 H 1.07996 * 120.00115 * 5.45650 * 15 12 11 17 17 C 1.37884 * 120.00063 * 185.46359 * 15 12 11 18 18 N 1.31515 * 119.99686 * 9.54331 * 17 15 12 19 19 Si 1.86803 * 119.99920 * 189.54911 * 17 15 12 20 20 H 1.48501 * 109.47152 * 84.98974 * 19 17 15 21 21 H 1.48499 * 109.46681 * 204.99059 * 19 17 15 22 22 H 1.48500 * 109.46922 * 324.99216 * 19 17 15 23 23 H 1.09003 * 109.47088 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47189 * 59.99763 * 1 2 3 25 25 H 1.08999 * 109.47207 * 299.99660 * 1 2 3 26 26 H 1.08999 * 109.47207 * 240.00340 * 2 1 3 27 27 H 1.09004 * 109.47380 * 60.00256 * 3 2 1 28 28 H 1.08998 * 109.47096 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47407 * 300.00103 * 3 2 1 30 30 H 1.09003 * 109.46669 * 183.66466 * 14 12 11 31 31 H 1.08997 * 109.46887 * 303.66067 * 14 12 11 32 32 H 1.08996 * 109.46868 * 63.66068 * 14 12 11 33 33 H 0.97007 * 119.99482 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7695 -0.3290 2.4582 6 7 2.2303 -0.9904 3.4438 7 16 3.0827 -2.1958 2.9203 8 6 2.8308 -1.8396 1.2015 9 6 3.3453 -2.5664 0.0316 10 8 3.0743 -2.1830 -1.0896 11 8 4.1176 -3.6579 0.2024 12 6 4.5897 -4.3257 -0.9974 13 1 4.7023 -3.5959 -1.7991 14 6 3.5778 -5.3935 -1.4184 15 6 5.9203 -4.9764 -0.7197 16 1 6.3251 -4.9719 0.2815 17 6 6.6210 -5.5772 -1.7440 18 7 6.2270 -5.4229 -2.9892 19 14 8.1299 -6.6105 -1.3629 20 1 7.7101 -7.9951 -1.0284 21 1 9.0239 -6.6369 -2.5483 22 1 8.8550 -6.0207 -0.2089 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.9624 -5.9386 -2.2804 31 1 3.4163 -6.0865 -0.5928 32 1 2.6341 -4.9159 -1.6818 33 1 6.7198 -5.8460 -3.7097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357526620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = -47.540185 kcal Electronic energy + Delta-G solvation = -18469.608653 eV Core-core repulsion = 15429.192768 eV Total energy + Delta-G solvation = -3040.415884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.28895 -41.14067 -37.81339 -36.53492 -35.32095 -32.66672 -31.63823 -28.79151 -28.07724 -27.41285 -25.36294 -23.42976 -22.62167 -21.41730 -19.28171 -19.03830 -18.16506 -17.61012 -17.36031 -16.59625 -16.47965 -16.15054 -15.22965 -15.04693 -14.35692 -14.20985 -14.11151 -13.97388 -13.42184 -13.33740 -13.04865 -13.02250 -12.76024 -12.52474 -12.31557 -12.26390 -12.17600 -12.07875 -11.67016 -11.60099 -11.15521 -11.06673 -11.01210 -10.86417 -10.59933 -8.31428 -6.44690 -1.51207 -0.32321 0.33841 0.68120 1.43296 1.46040 1.53888 1.56213 1.67988 2.39561 2.68661 3.01671 3.27892 3.75575 3.92527 4.10926 4.13004 4.48657 4.62398 4.74986 4.77980 4.79075 4.88724 4.91274 5.02174 5.11666 5.29334 5.35227 5.46579 5.54347 5.76761 5.98941 6.44745 6.53548 6.76162 7.25083 8.78390 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.005097 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.418050 B = 5492.399480 C = 6081.919212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.038 4.038 3 C -0.136 4.136 4 C 0.119 3.881 5 N -0.258 5.258 6 N -0.272 5.272 7 S 0.531 5.469 8 C -0.310 4.310 9 C 0.541 3.459 10 O -0.515 6.515 11 O -0.351 6.351 12 C 0.218 3.782 13 H 0.021 0.979 14 C -0.139 4.139 15 C -0.550 4.550 16 H 0.071 0.929 17 C 0.022 3.978 18 N -0.916 5.916 19 Si 0.977 3.023 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.264 1.264 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 7.579 8.663 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.193 4.193 4 C -0.030 4.030 5 N -0.122 5.122 6 N -0.254 5.254 7 S 0.668 5.332 8 C -0.448 4.448 9 C 0.384 3.616 10 O -0.405 6.405 11 O -0.267 6.267 12 C 0.165 3.835 13 H 0.038 0.962 14 C -0.197 4.197 15 C -0.588 4.588 16 H 0.089 0.911 17 C -0.179 4.179 18 N -0.553 5.553 19 Si 0.801 3.199 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.066 0.934 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.893 7.573 10.137 14.913 hybrid contribution 0.650 -0.419 -1.772 1.934 sum -7.243 7.154 8.365 13.176 Atomic orbital electron populations 1.21780 0.91354 1.02165 1.03938 1.20289 0.98165 0.96927 0.90584 1.21785 1.00593 0.93005 1.03960 1.23261 0.93180 0.91466 0.95071 1.70652 1.21178 1.24762 0.95635 1.78579 1.13754 1.08196 1.24856 1.82610 1.35072 1.24240 0.91276 1.26741 1.12606 1.05009 1.00449 1.19389 0.76254 0.79315 0.86659 1.90758 1.56784 1.67198 1.25793 1.86551 1.60042 1.38131 1.41946 1.20525 0.93172 0.89838 0.79940 0.96153 1.21947 0.96738 0.99369 1.01652 1.21234 1.03402 1.37643 0.96480 0.91070 1.25777 1.00944 0.97051 0.94080 1.70093 1.42299 1.43159 0.99736 0.85275 0.77699 0.78982 0.77980 1.19096 1.20630 1.18857 0.93426 0.89350 0.91201 0.88133 0.91154 0.93666 0.89326 0.91466 0.92569 0.94974 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.16 71.98 0.66 -2.20 16 2 C -0.04 -0.99 3.25 -11.54 -0.04 -1.03 16 3 C -0.14 -2.96 9.16 71.98 0.66 -2.30 16 4 C 0.12 3.54 5.53 42.67 0.24 3.78 16 5 N -0.26 -7.43 11.51 -48.14 -0.55 -7.98 16 6 N -0.27 -7.44 12.51 37.02 0.46 -6.98 16 7 S 0.53 13.72 23.63 -56.49 -1.34 12.39 16 8 C -0.31 -10.20 6.83 24.60 0.17 -10.04 16 9 C 0.54 22.28 7.92 70.12 0.56 22.84 16 10 O -0.51 -23.23 13.81 19.67 0.27 -22.95 16 11 O -0.35 -15.93 9.87 -57.11 -0.56 -16.50 16 12 C 0.22 11.32 2.43 29.85 0.07 11.40 16 13 H 0.02 1.21 7.10 -2.39 -0.02 1.19 16 14 C -0.14 -6.64 9.43 71.99 0.68 -5.96 16 15 C -0.55 -29.72 8.82 25.60 0.23 -29.50 16 16 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 17 C 0.02 1.17 5.17 84.66 0.44 1.61 16 18 N -0.92 -51.19 12.16 21.45 0.26 -50.93 16 19 Si 0.98 41.22 29.55 68.60 2.03 43.25 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.10 3.15 5.50 -2.39 -0.01 3.14 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 3.43 6.83 -2.39 -0.02 3.42 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -60.85 302.76 5.35 -55.50 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.13 Total: 5.61 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 3.66 Total: -11.40 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.17 Total: -65.89 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.29 Total: -39.45 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 13.72 SS G_CDS: -1.34 Total: 12.39 kcal Total: -60.85 5.35 -55.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357526620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.959 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds