Wall clock time and date at job start Mon Mar 30 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.31218 * 124.05803 * 299.70019 * 4 2 1 6 6 N 1.27336 * 120.04494 * 179.73091 * 5 4 2 7 7 S 1.56639 * 109.75561 * 0.52211 * 6 5 4 8 8 C 1.38321 * 124.06746 * 119.99695 * 4 2 1 9 9 C 1.47019 * 128.47740 * 0.02562 * 8 4 2 10 10 O 1.21546 * 120.00354 * 359.97438 * 9 8 4 11 11 O 1.34813 * 120.00019 * 179.97438 * 9 8 4 12 12 C 1.45193 * 117.00151 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47375 * 329.99917 * 12 11 9 14 14 C 1.53005 * 109.47169 * 89.99808 * 12 11 9 15 15 C 1.50694 * 109.47273 * 209.99796 * 12 11 9 16 16 H 1.07995 * 120.00167 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99994 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00244 * 0.02562 * 17 15 12 19 19 Si 1.86810 * 119.99842 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46889 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46832 * 120.00239 * 19 17 15 22 22 H 1.48494 * 109.47123 * 240.00411 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.09001 * 109.46882 * 300.00068 * 14 12 11 31 31 H 1.09002 * 109.46883 * 59.99807 * 14 12 11 32 32 H 1.09004 * 109.47260 * 179.97438 * 14 12 11 33 33 H 0.96998 * 120.00190 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7695 -0.3290 2.4581 6 7 2.2303 -0.9905 3.4438 7 16 3.0827 -2.1959 2.9203 8 6 2.8307 -1.8397 1.2015 9 6 3.3452 -2.5664 0.0316 10 8 3.0742 -2.1831 -1.0895 11 8 4.1176 -3.6581 0.2024 12 6 4.5896 -4.3259 -0.9973 13 1 3.8635 -4.1895 -1.7987 14 6 5.9331 -3.7272 -1.4192 15 6 4.7605 -5.7970 -0.7193 16 1 4.5363 -6.1909 0.2610 17 6 5.2020 -6.6405 -1.7166 18 7 5.4746 -6.1610 -2.9105 19 14 5.4144 -8.4641 -1.3716 20 1 5.0443 -8.7475 0.0383 21 1 4.5368 -9.2451 -2.2799 22 1 6.8304 -8.8493 -1.5992 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 5.8095 -2.6631 -1.6204 31 1 6.6592 -3.8636 -0.6178 32 1 6.2877 -4.2289 -2.3197 33 1 5.7848 -6.7544 -3.6123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357526644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:52 Heat of formation + Delta-G solvation = -30.207853 kcal Electronic energy + Delta-G solvation = -18473.096032 eV Core-core repulsion = 15433.431734 eV Total energy + Delta-G solvation = -3039.664298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04428 -39.48807 -36.18162 -35.34810 -33.39791 -31.32207 -29.68427 -27.48648 -27.17264 -25.42981 -23.93386 -22.09697 -21.05847 -19.85044 -17.95989 -17.34043 -16.52879 -15.98874 -15.86801 -15.19815 -14.92413 -14.59435 -14.20973 -13.34251 -13.17288 -12.87468 -12.53269 -12.27402 -12.19510 -11.99716 -11.40301 -11.30454 -11.27771 -11.16714 -11.00693 -10.88436 -10.47462 -10.35821 -10.28385 -9.83558 -9.78709 -9.73253 -9.68927 -9.03962 -8.59577 -6.28091 -4.35628 -0.24601 0.89713 1.54263 1.94233 3.08101 3.16805 3.19027 3.27107 3.34589 3.87912 4.25321 4.47989 4.96081 5.05665 5.10263 5.11627 5.47334 5.63010 5.65907 5.81072 5.86359 6.01352 6.19959 6.31823 6.50138 6.75312 6.77033 6.94287 7.44593 7.58678 7.65886 7.76311 7.99687 8.34663 8.73072 9.30218 10.79401 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026776 B = 0.005083 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.470667 B = 5507.143587 C = 6077.200864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 C -0.140 4.140 4 C 0.105 3.895 5 N -0.250 5.250 6 N -0.271 5.271 7 S 0.461 5.539 8 C -0.268 4.268 9 C 0.540 3.460 10 O -0.492 6.492 11 O -0.346 6.346 12 C 0.217 3.783 13 H 0.051 0.949 14 C -0.157 4.157 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.913 3.087 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.123 0.877 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 9.624 7.068 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 C -0.198 4.198 4 C -0.043 4.043 5 N -0.115 5.115 6 N -0.252 5.252 7 S 0.598 5.402 8 C -0.407 4.407 9 C 0.381 3.619 10 O -0.382 6.382 11 O -0.262 6.262 12 C 0.165 3.835 13 H 0.069 0.931 14 C -0.214 4.214 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.739 3.261 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.206 1.206 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.141 0.859 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.179 9.597 8.539 13.851 hybrid contribution 0.085 -0.782 -1.406 1.611 sum -5.094 8.816 7.133 12.431 Atomic orbital electron populations 1.21796 0.93170 1.02318 1.02543 1.20179 0.96684 0.96171 0.92245 1.21793 1.01232 0.94222 1.02555 1.22955 0.94566 0.92362 0.94421 1.70569 1.20483 1.24524 0.95921 1.78714 1.14000 1.07863 1.24603 1.82844 1.37285 1.25997 0.94068 1.27005 1.10251 1.03587 0.99871 1.19018 0.76974 0.80230 0.85680 1.90765 1.56684 1.66334 1.24409 1.86593 1.59269 1.36871 1.43479 1.20811 0.92556 0.90488 0.79615 0.93099 1.22196 0.98480 0.97308 1.03458 1.21030 1.46334 0.89884 0.98888 0.91070 1.24880 0.94666 0.99693 0.94596 1.69894 1.44439 1.35725 1.02459 0.86200 0.77944 0.83260 0.78650 1.19399 1.20685 1.20631 0.91427 0.91901 0.92549 0.85938 0.92611 0.91429 0.91895 0.96341 0.94223 0.87946 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.16 37.16 0.34 -1.27 16 2 C -0.03 -0.42 3.25 -91.77 -0.30 -0.71 16 3 C -0.14 -1.59 9.16 37.15 0.34 -1.25 16 4 C 0.10 1.60 5.53 -82.82 -0.46 1.14 16 5 N -0.25 -3.80 11.51 33.43 0.38 -3.42 16 6 N -0.27 -3.98 12.51 60.35 0.75 -3.23 16 7 S 0.46 6.38 23.63 -107.50 -2.54 3.84 16 8 C -0.27 -4.48 6.83 -35.99 -0.25 -4.72 16 9 C 0.54 10.93 7.92 34.29 0.27 11.20 16 10 O -0.49 -10.70 13.81 -19.30 -0.27 -10.97 16 11 O -0.35 -7.79 9.87 -40.80 -0.40 -8.19 16 12 C 0.22 5.53 2.56 -27.88 -0.07 5.46 16 13 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 14 C -0.16 -3.77 9.33 37.16 0.35 -3.43 16 15 C -0.52 -14.03 8.90 -34.44 -0.31 -14.34 16 16 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 19 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.12 1.88 5.50 -51.93 -0.29 1.60 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 2.65 6.07 -51.93 -0.32 2.33 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 301.44 15.07 4.54 4.54 Total: -1.00 -28.26 301.44 -6.00 -34.26 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -3.90 Total: -2.19 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.18 Total: -6.33 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 1.77 Total: -30.27 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.67 Total: -19.16 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -2.54 Total: 3.84 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.26 -6.00 -34.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357526644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.051 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds