Wall clock time and date at job start Mon Mar 30 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.31218 * 124.05803 * 299.70019 * 4 2 1 6 6 N 1.27336 * 120.04494 * 179.73091 * 5 4 2 7 7 S 1.56639 * 109.75561 * 0.52211 * 6 5 4 8 8 C 1.38321 * 124.06746 * 119.99695 * 4 2 1 9 9 C 1.47019 * 128.47740 * 0.02562 * 8 4 2 10 10 O 1.21546 * 120.00354 * 359.97438 * 9 8 4 11 11 O 1.34813 * 120.00019 * 179.97438 * 9 8 4 12 12 C 1.45193 * 117.00151 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47375 * 329.99917 * 12 11 9 14 14 C 1.53005 * 109.47169 * 89.99808 * 12 11 9 15 15 C 1.50694 * 109.47273 * 209.99796 * 12 11 9 16 16 H 1.07995 * 120.00167 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99994 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00244 * 0.02562 * 17 15 12 19 19 Si 1.86810 * 119.99842 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46889 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46832 * 120.00239 * 19 17 15 22 22 H 1.48494 * 109.47123 * 240.00411 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.09001 * 109.46882 * 300.00068 * 14 12 11 31 31 H 1.09002 * 109.46883 * 59.99807 * 14 12 11 32 32 H 1.09004 * 109.47260 * 179.97438 * 14 12 11 33 33 H 0.96998 * 120.00190 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7695 -0.3290 2.4581 6 7 2.2303 -0.9905 3.4438 7 16 3.0827 -2.1959 2.9203 8 6 2.8307 -1.8397 1.2015 9 6 3.3452 -2.5664 0.0316 10 8 3.0742 -2.1831 -1.0895 11 8 4.1176 -3.6581 0.2024 12 6 4.5896 -4.3259 -0.9973 13 1 3.8635 -4.1895 -1.7987 14 6 5.9331 -3.7272 -1.4192 15 6 4.7605 -5.7970 -0.7193 16 1 4.5363 -6.1909 0.2610 17 6 5.2020 -6.6405 -1.7166 18 7 5.4746 -6.1610 -2.9105 19 14 5.4144 -8.4641 -1.3716 20 1 5.0443 -8.7475 0.0383 21 1 4.5368 -9.2451 -2.2799 22 1 6.8304 -8.8493 -1.5992 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 5.8095 -2.6631 -1.6204 31 1 6.6592 -3.8636 -0.6178 32 1 6.2877 -4.2289 -2.3197 33 1 5.7848 -6.7544 -3.6123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357526644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:52 Heat of formation + Delta-G solvation = -46.120087 kcal Electronic energy + Delta-G solvation = -18473.786038 eV Core-core repulsion = 15433.431734 eV Total energy + Delta-G solvation = -3040.354304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.29183 -41.14657 -37.82220 -36.53789 -35.36783 -32.65035 -31.55012 -28.78881 -28.07800 -27.45721 -25.35370 -23.41825 -22.61297 -21.41745 -19.28294 -19.04232 -18.18474 -17.60994 -17.35735 -16.62099 -16.48497 -16.15663 -15.23025 -15.04137 -14.35942 -14.19939 -14.11154 -13.94402 -13.41326 -13.25970 -13.06495 -13.04924 -12.82733 -12.40868 -12.31266 -12.26462 -12.16357 -12.07496 -11.68171 -11.61320 -11.14969 -11.05319 -11.00770 -10.86706 -10.60588 -8.29190 -6.45617 -1.51507 -0.32555 0.33574 0.67836 1.43372 1.44355 1.54504 1.56506 1.68375 2.39355 2.68513 3.02604 3.27627 3.75798 3.92409 4.10854 4.12951 4.48353 4.62691 4.78107 4.79024 4.80571 4.88902 4.91231 5.05238 5.12189 5.29300 5.35380 5.47605 5.59603 5.83652 5.99938 6.44468 6.53224 6.75168 7.25288 8.78684 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026776 B = 0.005083 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.470667 B = 5507.143587 C = 6077.200864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 C -0.135 4.135 4 C 0.119 3.881 5 N -0.258 5.258 6 N -0.272 5.272 7 S 0.530 5.470 8 C -0.310 4.310 9 C 0.541 3.459 10 O -0.515 6.515 11 O -0.351 6.351 12 C 0.220 3.780 13 H 0.017 0.983 14 C -0.145 4.145 15 C -0.547 4.547 16 H 0.071 0.929 17 C 0.020 3.980 18 N -0.915 5.915 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.273 1.273 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 9.678 8.371 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.060 4.060 3 C -0.193 4.193 4 C -0.030 4.030 5 N -0.122 5.122 6 N -0.254 5.254 7 S 0.667 5.333 8 C -0.448 4.448 9 C 0.384 3.616 10 O -0.405 6.405 11 O -0.267 6.267 12 C 0.167 3.833 13 H 0.035 0.965 14 C -0.203 4.203 15 C -0.585 4.585 16 H 0.089 0.911 17 C -0.180 4.180 18 N -0.553 5.553 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.198 1.198 23 H 0.107 0.893 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.461 9.670 9.858 14.850 hybrid contribution 0.136 -0.739 -1.747 1.902 sum -5.325 8.931 8.111 13.187 Atomic orbital electron populations 1.21785 0.91503 1.02080 1.03960 1.20290 0.98066 0.97025 0.90572 1.21779 1.00672 0.92861 1.03947 1.23264 0.93123 0.91496 0.95080 1.70654 1.21138 1.24788 0.95636 1.78583 1.13762 1.08157 1.24856 1.82626 1.35182 1.24161 0.91311 1.26739 1.12733 1.04904 1.00436 1.19386 0.76120 0.79426 0.86669 1.90752 1.57304 1.66696 1.25775 1.86556 1.60207 1.37974 1.41974 1.20522 0.92199 0.90818 0.79732 0.96481 1.22026 0.97984 0.97483 1.02796 1.21301 1.47196 0.90808 0.99189 0.91121 1.25765 0.93904 1.04153 0.94199 1.70005 1.44585 1.37408 1.03279 0.85163 0.78141 0.77542 0.78761 1.18631 1.20283 1.19789 0.89318 0.91171 0.93611 0.88117 0.93474 0.89335 0.91195 0.95430 0.93354 0.89794 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.16 71.98 0.66 -2.27 16 2 C -0.04 -0.98 3.25 -11.54 -0.04 -1.02 16 3 C -0.13 -2.87 9.16 71.98 0.66 -2.21 16 4 C 0.12 3.54 5.53 42.67 0.24 3.78 16 5 N -0.26 -7.42 11.51 -48.14 -0.55 -7.98 16 6 N -0.27 -7.44 12.51 37.02 0.46 -6.98 16 7 S 0.53 13.76 23.63 -56.49 -1.34 12.42 16 8 C -0.31 -10.21 6.83 24.59 0.17 -10.04 16 9 C 0.54 22.29 7.92 70.12 0.56 22.84 16 10 O -0.51 -23.13 13.81 19.69 0.27 -22.86 16 11 O -0.35 -16.02 9.87 -57.25 -0.56 -16.59 16 12 C 0.22 11.48 2.56 29.85 0.08 11.55 16 13 H 0.02 1.01 7.16 -2.39 -0.02 0.99 16 14 C -0.15 -7.10 9.33 71.98 0.67 -6.43 16 15 C -0.55 -29.61 8.90 25.60 0.23 -29.38 16 16 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 17 C 0.02 1.05 5.30 84.66 0.45 1.50 16 18 N -0.91 -50.51 11.32 21.45 0.24 -50.27 16 19 Si 0.98 41.23 29.54 68.60 2.03 43.26 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.10 3.14 5.50 -2.39 -0.01 3.13 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 4.43 6.07 -2.39 -0.01 4.41 16 33 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -60.32 301.44 5.34 -54.98 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.13 Total: 5.70 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 3.67 Total: -11.68 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: 0.15 Total: -65.23 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.29 Total: -39.45 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 13.76 SS G_CDS: -1.34 Total: 12.42 kcal Total: -60.32 5.34 -54.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357526644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.857 kcal (2) G-P(sol) polarization free energy of solvation -60.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds