Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 120.42036 * 2 1 4 4 N 1.31851 * 120.76086 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.73282 * 359.70403 * 4 3 2 6 6 C 1.38191 * 120.75665 * 0.57851 * 5 4 3 7 7 S 1.76204 * 120.41306 * 179.70695 * 6 5 4 8 8 O 1.42098 * 106.39820 * 156.19192 * 7 6 5 9 9 O 1.42093 * 106.40397 * 23.26898 * 7 6 5 10 10 N 1.65601 * 107.21660 * 269.72690 * 7 6 5 11 11 C 1.46500 * 120.00132 * 65.00075 * 10 7 6 12 12 H 1.08998 * 109.46845 * 25.00607 * 11 10 7 13 13 C 1.52997 * 109.47473 * 265.00058 * 11 10 7 14 14 C 1.50706 * 109.47187 * 144.99661 * 11 10 7 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46848 * 60.00326 * 18 16 14 20 20 H 1.48500 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47237 * 300.00475 * 18 16 14 22 22 C 1.38625 * 120.41894 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46774 * 269.98085 * 1 2 3 24 24 H 1.08997 * 109.47369 * 29.97693 * 1 2 3 25 25 H 1.08995 * 109.47176 * 149.97786 * 1 2 3 26 26 H 1.07998 * 119.61770 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.62743 * 180.31593 * 5 4 3 28 28 H 0.97003 * 119.99877 * 245.00296 * 10 7 6 29 29 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 30 30 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 31 31 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 32 32 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 33 33 H 1.07997 * 120.79076 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2257 0.0823 0.0048 6 6 3.5947 -1.1471 -0.0009 7 16 4.5393 -2.6346 -0.0016 8 8 3.6996 -3.6433 0.5429 9 8 5.8095 -2.3035 0.5425 10 7 4.8015 -3.0480 -1.5836 11 6 5.6135 -2.1821 -2.4421 12 1 6.2993 -1.6001 -1.8264 13 6 4.6993 -1.2351 -3.2220 14 6 6.4014 -3.0289 -3.4082 15 1 6.3064 -4.1044 -3.3853 16 6 7.2426 -2.4304 -4.3221 17 7 7.3580 -1.1207 -4.3504 18 14 8.2186 -3.4800 -5.5201 19 1 7.2840 -4.2730 -6.3585 20 1 9.0418 -2.6023 -6.3902 21 1 9.1063 -4.3992 -4.7635 22 6 2.2089 -1.1954 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5141 26 1 1.6675 2.1276 -0.0004 27 1 5.3047 0.1284 0.0093 28 1 4.4174 -3.8635 -1.9418 29 1 4.1295 -0.6227 -2.5232 30 1 4.0136 -1.8172 -3.8377 31 1 5.3036 -0.5905 -3.8605 32 1 7.9501 -0.6997 -4.9930 33 1 1.6888 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463068521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = -47.835432 kcal Electronic energy + Delta-G solvation = -18927.019328 eV Core-core repulsion = 15886.590641 eV Total energy + Delta-G solvation = -3040.428687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17212 -36.81178 -35.52072 -35.39266 -33.68797 -32.27022 -32.13158 -28.38443 -27.42941 -25.29818 -24.01349 -22.55579 -21.01143 -18.95549 -17.57761 -17.41233 -16.68572 -16.56724 -15.94283 -15.20193 -14.58951 -14.39467 -13.78930 -13.64610 -13.18558 -12.95741 -12.81502 -12.71092 -12.32499 -12.24938 -11.81088 -11.66706 -11.56103 -11.24682 -11.00396 -10.95606 -10.70596 -10.40404 -10.15699 -10.04458 -9.49271 -9.28568 -9.07586 -8.67792 -8.34775 -6.15569 -4.23332 0.62908 0.96979 1.18326 3.26634 3.31550 3.33513 3.47046 3.73499 4.20077 4.33977 4.42577 4.48072 4.75133 4.84682 4.94788 5.13163 5.17231 5.38491 5.50636 5.59306 5.76469 5.93690 6.02495 6.26001 6.56891 6.69332 6.74177 6.93626 7.50287 7.60799 7.79452 7.83623 7.95367 8.20992 8.78809 9.42816 10.90574 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.006139 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.495214 B = 4559.833590 C = 5023.126582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.167 4.167 3 C 0.144 3.856 4 N -0.492 5.492 5 C 0.202 3.798 6 C -0.718 4.718 7 S 2.694 3.306 8 O -0.979 6.979 9 O -0.956 6.956 10 N -1.096 6.096 11 C 0.267 3.733 12 H 0.052 0.948 13 C -0.158 4.158 14 C -0.523 4.523 15 H 0.065 0.935 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.023 3.977 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.159 0.841 27 H 0.174 0.826 28 H 0.410 0.590 29 H 0.008 0.992 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.266 0.734 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.962 2.497 6.254 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.201 5.201 5 C 0.044 3.956 6 C -0.804 4.804 7 S 2.780 3.220 8 O -0.969 6.969 9 O -0.946 6.946 10 N -0.858 5.858 11 C 0.163 3.837 12 H 0.070 0.930 13 C -0.217 4.217 14 C -0.562 4.562 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.004 4.004 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.176 0.824 27 H 0.191 0.809 28 H 0.245 0.755 29 H 0.027 0.973 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.059 3.223 6.967 13.462 hybrid contribution -0.487 -0.949 -1.254 1.646 sum -11.546 2.274 5.713 13.081 Atomic orbital electron populations 1.20701 0.89721 1.03377 1.02634 1.20973 0.97834 0.94354 1.03802 1.22983 0.90264 0.97550 0.90548 1.67834 1.08096 1.31003 1.13133 1.22642 1.00824 0.86003 0.86164 1.32269 1.08242 1.22240 1.17654 1.01869 0.73629 0.72968 0.73554 1.93521 1.69402 1.56093 1.77922 1.93584 1.39133 1.84552 1.77301 1.55526 1.65683 1.34560 1.30012 1.18654 0.87672 0.88226 0.89121 0.92992 1.22301 0.99180 0.99833 1.00402 1.21152 1.24904 0.93385 1.16792 0.91690 1.24915 0.96510 0.95151 0.97278 1.69843 1.37703 1.08490 1.36532 0.86482 0.79907 0.79996 0.80575 1.20207 1.21164 1.20045 1.21181 0.91799 0.99104 0.88331 0.90879 0.91058 0.91043 0.82410 0.80928 0.75540 0.97251 0.94688 0.88652 0.92439 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.04 36.01 0.36 -0.52 16 2 C -0.17 -2.03 5.90 -104.48 -0.62 -2.65 16 3 C 0.14 1.86 10.86 -17.55 -0.19 1.67 16 4 N -0.49 -7.93 10.36 -13.25 -0.14 -8.07 16 5 C 0.20 3.45 9.77 -17.55 -0.17 3.28 16 6 C -0.72 -11.87 5.07 -39.44 -0.20 -12.07 16 7 S 2.69 49.50 5.73 -107.50 -0.62 48.88 16 8 O -0.98 -18.50 17.36 -57.17 -0.99 -19.49 16 9 O -0.96 -20.39 16.64 -57.17 -0.95 -21.34 16 10 N -1.10 -21.39 5.46 -5.88 -0.03 -21.42 16 11 C 0.27 6.26 2.90 -69.08 -0.20 6.06 16 12 H 0.05 1.32 7.50 -51.93 -0.39 0.93 16 13 C -0.16 -3.53 9.29 37.16 0.35 -3.18 16 14 C -0.52 -13.50 8.76 -34.44 -0.30 -13.80 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 18 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.02 0.32 9.33 -39.28 -0.37 -0.05 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.17 2.95 7.62 -52.49 -0.40 2.55 16 28 H 0.41 7.20 8.83 -34.47 -0.30 6.90 16 29 H 0.01 0.17 6.19 -51.93 -0.32 -0.15 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.15 1.80 7.71 -52.49 -0.40 1.40 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -31.28 295.53 -7.89 -39.17 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.79 Total: 5.49 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -1.43 Total: -19.66 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.46 Total: -52.91 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.94 Total: -40.84 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 49.50 SS G_CDS: -0.62 Total: 48.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.28 -7.89 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463068521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.662 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds