Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 120.42036 * 2 1 4 4 N 1.31851 * 120.76086 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.73282 * 359.70403 * 4 3 2 6 6 C 1.38191 * 120.75665 * 0.57851 * 5 4 3 7 7 S 1.76204 * 120.41306 * 179.70695 * 6 5 4 8 8 O 1.42098 * 106.39820 * 156.19192 * 7 6 5 9 9 O 1.42093 * 106.40397 * 23.26898 * 7 6 5 10 10 N 1.65601 * 107.21660 * 269.72690 * 7 6 5 11 11 C 1.46500 * 120.00132 * 65.00075 * 10 7 6 12 12 H 1.08998 * 109.46845 * 25.00607 * 11 10 7 13 13 C 1.52997 * 109.47473 * 265.00058 * 11 10 7 14 14 C 1.50706 * 109.47187 * 144.99661 * 11 10 7 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46848 * 60.00326 * 18 16 14 20 20 H 1.48500 * 109.47035 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47237 * 300.00475 * 18 16 14 22 22 C 1.38625 * 120.41894 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46774 * 269.98085 * 1 2 3 24 24 H 1.08997 * 109.47369 * 29.97693 * 1 2 3 25 25 H 1.08995 * 109.47176 * 149.97786 * 1 2 3 26 26 H 1.07998 * 119.61770 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.62743 * 180.31593 * 5 4 3 28 28 H 0.97003 * 119.99877 * 245.00296 * 10 7 6 29 29 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 30 30 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 31 31 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 32 32 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 33 33 H 1.07997 * 120.79076 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2257 0.0823 0.0048 6 6 3.5947 -1.1471 -0.0009 7 16 4.5393 -2.6346 -0.0016 8 8 3.6996 -3.6433 0.5429 9 8 5.8095 -2.3035 0.5425 10 7 4.8015 -3.0480 -1.5836 11 6 5.6135 -2.1821 -2.4421 12 1 6.2993 -1.6001 -1.8264 13 6 4.6993 -1.2351 -3.2220 14 6 6.4014 -3.0289 -3.4082 15 1 6.3064 -4.1044 -3.3853 16 6 7.2426 -2.4304 -4.3221 17 7 7.3580 -1.1207 -4.3504 18 14 8.2186 -3.4800 -5.5201 19 1 7.2840 -4.2730 -6.3585 20 1 9.0418 -2.6023 -6.3902 21 1 9.1063 -4.3992 -4.7635 22 6 2.2089 -1.1954 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5141 26 1 1.6675 2.1276 -0.0004 27 1 5.3047 0.1284 0.0093 28 1 4.4174 -3.8635 -1.9418 29 1 4.1295 -0.6227 -2.5232 30 1 4.0136 -1.8172 -3.8377 31 1 5.3036 -0.5905 -3.8605 32 1 7.9501 -0.6997 -4.9930 33 1 1.6888 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463068521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = -71.225615 kcal Electronic energy + Delta-G solvation = -18928.033602 eV Core-core repulsion = 15886.590641 eV Total energy + Delta-G solvation = -3041.442962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29298 -38.37831 -37.30291 -36.97259 -34.68174 -34.14692 -33.32323 -30.17255 -28.31126 -27.26228 -25.15987 -23.65478 -22.84893 -20.47132 -19.20850 -18.72941 -17.98996 -17.88020 -17.51606 -16.98454 -16.23709 -15.45289 -15.36465 -14.75659 -14.56132 -14.31069 -14.06080 -13.85972 -13.69961 -13.53497 -13.27178 -13.15488 -13.09524 -13.04105 -12.80360 -12.51158 -12.26325 -12.18421 -11.99887 -11.31964 -11.13616 -10.69358 -10.56604 -10.17412 -10.05894 -8.14373 -6.28763 -0.65996 -0.38654 0.07262 1.46844 1.48445 1.55643 2.07203 2.43881 2.47013 2.77581 3.15394 3.23429 3.35553 3.73797 3.79892 3.93356 4.06702 4.40692 4.49940 4.68441 4.75049 4.84914 4.86426 4.95172 5.09537 5.12252 5.15791 5.54519 5.57055 5.72645 6.01108 6.09538 6.39406 6.69912 6.81132 7.40811 8.90808 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.006139 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.495214 B = 4559.833590 C = 5023.126582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.152 4.152 3 C 0.141 3.859 4 N -0.512 5.512 5 C 0.179 3.821 6 C -0.724 4.724 7 S 2.712 3.288 8 O -0.983 6.983 9 O -0.993 6.993 10 N -1.096 6.096 11 C 0.273 3.727 12 H 0.024 0.976 13 C -0.144 4.144 14 C -0.543 4.543 15 H 0.068 0.932 16 C 0.017 3.983 17 N -0.914 5.914 18 Si 0.963 3.037 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.275 1.275 22 C 0.010 3.990 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.199 0.801 27 H 0.157 0.843 28 H 0.419 0.581 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.266 0.734 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.357 2.535 6.066 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.155 4.155 3 C -0.016 4.016 4 N -0.221 5.221 5 C 0.021 3.979 6 C -0.814 4.814 7 S 2.801 3.199 8 O -0.973 6.973 9 O -0.983 6.983 10 N -0.857 5.857 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.203 4.203 14 C -0.582 4.582 15 H 0.086 0.914 16 C -0.183 4.183 17 N -0.552 5.552 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.016 4.016 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.215 0.785 27 H 0.174 0.826 28 H 0.255 0.745 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.447 3.207 6.780 15.397 hybrid contribution 0.121 -0.880 -1.115 1.426 sum -13.326 2.327 5.665 14.666 Atomic orbital electron populations 1.20846 0.86283 1.04964 1.04244 1.21447 1.00090 0.93055 1.00894 1.23731 0.89283 0.99707 0.88880 1.67837 1.09918 1.30491 1.13872 1.22496 1.00583 0.86840 0.87985 1.31779 1.09265 1.20344 1.19969 1.01045 0.72993 0.73202 0.72632 1.93506 1.69195 1.56910 1.77694 1.93533 1.41648 1.85231 1.77862 1.55302 1.65684 1.34846 1.29918 1.18337 0.87836 0.88351 0.88758 0.95849 1.22090 0.98688 0.99377 1.00175 1.21551 1.25426 0.93901 1.17328 0.91405 1.25687 0.97486 0.96204 0.98920 1.69973 1.38278 1.09817 1.37177 0.85536 0.78600 0.78465 0.78568 1.19207 1.20992 1.19991 1.21564 0.90786 1.01042 0.88209 0.89041 0.88921 0.90112 0.78469 0.82554 0.74523 0.95486 0.94017 0.91257 0.92502 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.04 71.24 0.72 -0.53 16 2 C -0.15 -3.20 5.90 -19.77 -0.12 -3.32 16 3 C 0.14 3.24 10.86 84.69 0.92 4.16 16 4 N -0.51 -16.08 10.36 -195.84 -2.03 -18.11 16 5 C 0.18 6.23 9.77 84.67 0.83 7.05 16 6 C -0.72 -23.69 5.07 22.36 0.11 -23.58 16 7 S 2.71 100.83 5.73 -56.49 -0.32 100.51 16 8 O -0.98 -36.54 17.36 -128.00 -2.22 -38.76 16 9 O -0.99 -44.06 16.64 -128.00 -2.13 -46.19 16 10 N -1.10 -43.15 5.46 -172.52 -0.94 -44.10 16 11 C 0.27 13.03 2.90 44.25 0.13 13.16 16 12 H 0.02 1.26 7.50 -2.39 -0.02 1.24 16 13 C -0.14 -6.48 9.29 71.98 0.67 -5.81 16 14 C -0.54 -28.32 8.76 25.60 0.22 -28.09 16 15 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.91 -50.44 11.32 21.45 0.24 -50.20 16 18 Si 0.96 41.92 29.54 68.60 2.03 43.95 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 C 0.01 0.27 9.33 22.46 0.21 0.48 16 23 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 25 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 26 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.16 5.75 7.62 -2.91 -0.02 5.73 16 28 H 0.42 14.63 8.83 -96.74 -0.85 13.78 16 29 H 0.03 1.08 6.19 -2.39 -0.01 1.06 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 3.52 6.07 -2.38 -0.01 3.50 16 32 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.17 3.62 7.71 -2.91 -0.02 3.60 16 Total: -1.00 -67.67 295.53 -0.96 -68.63 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.28 Total: 19.37 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 4.14 Total: -35.11 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -2.73 Total: -112.40 kcal Atomic # 8 Polarization: -80.60 SS G_CDS: -4.35 Total: -84.95 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 100.83 SS G_CDS: -0.32 Total: 100.51 kcal Total: -67.67 -0.96 -68.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463068521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds