Wall clock time and date at job start Mon Mar 30 2020 01:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.35958 * 116.99807 * 179.97438 * 16 15 13 18 18 C 1.38255 * 121.63839 * 179.73957 * 17 16 15 19 19 C 1.35058 * 114.72313 * 179.80335 * 18 17 16 20 20 S 1.72024 * 105.59887 * 0.41705 * 19 18 17 21 21 N 1.30344 * 121.63721 * 0.02562 * 17 16 15 22 22 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 23 23 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 24 24 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 26 26 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 27 27 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 28 28 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 29 29 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 32 32 H 1.08004 * 122.63900 * 0.02562 * 18 17 16 33 33 H 1.08001 * 127.20311 * 180.17707 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1289 1.6914 4.8148 18 6 2.4044 2.4536 5.9349 19 6 2.1787 1.8305 7.1117 20 16 1.6217 0.2554 6.7017 21 7 1.7000 0.4782 5.0224 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.5818 1.6876 -2.0283 28 1 2.0956 3.1410 -1.1384 29 1 3.6747 3.5148 -4.4447 30 1 0.9443 1.0114 2.5302 31 1 2.6227 0.4186 2.5299 32 1 2.7680 3.4688 5.8736 33 1 2.3220 2.2350 8.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464389962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:07 Heat of formation + Delta-G solvation = -23.368256 kcal Electronic energy + Delta-G solvation = -18195.564445 eV Core-core repulsion = 15156.196734 eV Total energy + Delta-G solvation = -3039.367711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32694 -38.92605 -36.59723 -35.30306 -32.83715 -31.31875 -30.17594 -29.17713 -26.67680 -24.37890 -23.06725 -22.44331 -20.64310 -18.89049 -18.12528 -17.62230 -16.64990 -16.29606 -16.23920 -15.47680 -14.54350 -14.48411 -14.43758 -13.85424 -13.44113 -13.37900 -12.97468 -12.59354 -12.24962 -12.05386 -11.67807 -11.41946 -11.25970 -11.07682 -10.90916 -10.85331 -10.71021 -10.56099 -10.14919 -9.92022 -9.64402 -8.99520 -8.45196 -8.44339 -7.75012 -6.06014 -4.10805 0.53025 1.25008 1.57168 2.35731 2.84392 3.25911 3.29625 3.37508 3.42161 3.98846 4.43653 4.58115 4.88071 5.03481 5.15135 5.24615 5.28783 5.32094 5.38942 5.54985 5.59560 5.73989 5.99823 6.10721 6.19421 6.45145 6.91641 7.11376 7.39727 7.48700 7.90227 8.20313 8.29718 8.84706 8.99599 9.54339 11.02218 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028621 B = 0.004108 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.068004 B = 6814.318128 C = 7265.369794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.050 3.950 16 O -0.265 6.265 17 C 0.315 3.685 18 C -0.198 4.198 19 C -0.186 4.186 20 S 0.270 5.730 21 N -0.530 5.530 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 -7.205 19.157 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.028 4.028 16 O -0.168 6.168 17 C 0.101 3.899 18 C -0.234 4.234 19 C -0.333 4.333 20 S 0.418 5.582 21 N -0.371 5.371 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.184 0.816 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.019 -8.216 18.796 21.378 hybrid contribution 1.515 1.388 -0.621 2.146 sum -4.504 -6.828 18.176 19.931 Atomic orbital electron populations 1.22228 0.96540 1.01659 1.02390 1.21504 0.93746 0.83934 1.03011 1.48186 1.63790 1.13405 1.07079 1.19337 0.96499 0.93713 0.77569 1.21471 0.96851 1.32024 1.06321 0.92337 1.24932 0.97934 0.94855 0.96351 1.69942 1.35619 1.33453 1.14298 0.86427 0.84529 0.78088 0.78292 1.19795 1.20935 1.20838 1.19716 0.79680 0.87107 0.84331 1.90718 1.44566 1.17569 1.86763 1.22661 1.02614 0.92909 0.84649 1.86413 1.81284 1.39323 1.09825 1.20404 0.93269 0.88535 0.87701 1.20438 1.09705 1.04501 0.88728 1.26470 1.03086 1.00927 1.02847 1.83898 1.62836 1.12643 0.98871 1.76612 1.31575 1.18809 1.10094 0.93142 0.91817 0.91916 0.89446 0.91733 0.94605 0.93720 0.92726 0.89085 0.89041 0.81550 0.79261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.10 1.64 5.93 -4.05 -0.02 1.62 16 3 N -0.59 -12.64 2.46 -175.06 -0.43 -13.07 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.51 11.05 7.75 -10.98 -0.09 10.97 16 14 O -0.52 -13.79 16.08 -14.35 -0.23 -14.02 16 15 C 0.05 0.86 4.43 36.01 0.16 1.02 16 16 O -0.26 -4.67 9.71 -39.52 -0.38 -5.06 16 17 C 0.32 4.56 7.42 -18.18 -0.13 4.43 16 18 C -0.20 -2.22 10.20 -40.71 -0.42 -2.63 16 19 C -0.19 -1.52 11.41 29.60 0.34 -1.19 16 20 S 0.27 2.59 23.71 -107.50 -2.55 0.04 16 21 N -0.53 -7.28 11.14 28.91 0.32 -6.96 16 22 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 26 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 27 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.09 1.36 7.18 -51.93 -0.37 0.99 16 31 H 0.09 1.42 7.40 -51.93 -0.38 1.04 16 32 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.19 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -34.23 304.94 -7.12 -41.35 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -3.93 Total: -3.02 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.23 Total: 5.05 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.63 Total: -45.89 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.61 Total: -19.07 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.55 Total: 0.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.23 -7.12 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464389962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.979 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds