Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.35958 * 116.99807 * 179.97438 * 16 15 13 18 18 C 1.38255 * 121.63839 * 179.73957 * 17 16 15 19 19 C 1.35058 * 114.72313 * 179.80335 * 18 17 16 20 20 S 1.72024 * 105.59887 * 0.41705 * 19 18 17 21 21 N 1.30344 * 121.63721 * 0.02562 * 17 16 15 22 22 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 23 23 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 24 24 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 26 26 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 27 27 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 28 28 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 29 29 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 31 31 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 32 32 H 1.08004 * 122.63900 * 0.02562 * 18 17 16 33 33 H 1.08001 * 127.20311 * 180.17707 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 8 2.3022 2.1813 3.5585 17 6 2.1289 1.6914 4.8148 18 6 2.4044 2.4536 5.9349 19 6 2.1787 1.8305 7.1117 20 16 1.6217 0.2554 6.7017 21 7 1.7000 0.4782 5.0224 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.5818 1.6876 -2.0283 28 1 2.0956 3.1410 -1.1384 29 1 3.6747 3.5148 -4.4447 30 1 0.9443 1.0114 2.5302 31 1 2.6227 0.4186 2.5299 32 1 2.7680 3.4688 5.8736 33 1 2.3220 2.2350 8.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464389962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = -47.802565 kcal Electronic energy + Delta-G solvation = -18196.623996 eV Core-core repulsion = 15156.196734 eV Total energy + Delta-G solvation = -3040.427262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53033 -40.45163 -37.72617 -37.01024 -34.95534 -32.16721 -31.76913 -30.67591 -28.50243 -25.58291 -24.66396 -24.00605 -21.60480 -20.34750 -19.14124 -18.79666 -18.64358 -17.82721 -17.62764 -17.18158 -16.31927 -15.98634 -15.27162 -15.18349 -14.78835 -14.66028 -14.33419 -14.07014 -13.71077 -13.63678 -13.31725 -13.09935 -12.71028 -12.55147 -12.35633 -12.25599 -12.16465 -11.89841 -11.72064 -11.71588 -10.77254 -10.75838 -10.66891 -9.57818 -9.29534 -8.25221 -6.39946 -0.26569 0.44428 0.73123 1.35379 1.38040 1.42622 1.48943 1.57800 1.62224 2.35548 2.59144 3.04876 3.41736 3.69666 3.91182 3.96980 4.13548 4.35766 4.38405 4.54492 4.56421 4.79081 4.86712 4.91829 5.00126 5.13401 5.17914 5.33491 5.51727 5.76277 5.98617 6.01953 6.57592 6.69164 7.18083 7.34019 8.82594 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028621 B = 0.004108 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.068004 B = 6814.318128 C = 7265.369794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.281 1.281 13 C 0.498 3.502 14 O -0.581 6.581 15 C 0.071 3.929 16 O -0.297 6.297 17 C 0.293 3.707 18 C -0.229 4.229 19 C -0.152 4.152 20 S 0.314 5.686 21 N -0.566 5.566 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.031 0.969 28 H -0.002 1.002 29 H 0.268 0.732 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.172 0.828 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -9.200 21.405 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.207 1.207 13 C 0.285 3.715 14 O -0.461 6.461 15 C -0.007 4.007 16 O -0.202 6.202 17 C 0.080 3.920 18 C -0.264 4.264 19 C -0.299 4.299 20 S 0.462 5.538 21 N -0.407 5.407 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.190 0.810 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.831 -10.274 21.066 24.152 hybrid contribution 1.378 1.952 -1.160 2.656 sum -4.454 -8.322 19.906 22.030 Atomic orbital electron populations 1.22163 0.94254 1.03808 1.01752 1.21859 0.95606 0.80922 1.04330 1.48192 1.63491 1.15264 1.05620 1.18804 0.95688 0.91617 0.79733 1.21729 0.97782 1.32282 1.06671 0.92833 1.25854 1.02485 0.94350 0.96335 1.70054 1.37717 1.34111 1.14779 0.85343 0.78842 0.78034 0.78434 1.19224 1.19191 1.20731 1.20609 0.78280 0.86607 0.85984 1.90673 1.47301 1.20318 1.87823 1.22382 1.04151 0.92025 0.82136 1.86339 1.82251 1.40376 1.11248 1.20732 0.94903 0.89503 0.86889 1.20580 1.11806 1.05163 0.88805 1.26994 0.99641 0.99592 1.03698 1.83753 1.61464 1.12722 0.95829 1.76362 1.31870 1.18730 1.13709 0.92615 0.93650 0.88276 0.89911 0.88589 0.95120 0.98341 0.92301 0.86810 0.87363 0.81033 0.74861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.24 71.98 0.74 -3.39 16 2 C 0.09 2.97 5.93 86.38 0.51 3.48 16 3 N -0.59 -26.08 2.46 -826.16 -2.03 -28.11 16 4 C 0.26 14.44 5.16 85.64 0.44 14.88 16 5 C -0.55 -32.04 9.39 25.60 0.24 -31.80 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 9 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 C 0.50 22.44 7.75 87.66 0.68 23.12 16 14 O -0.58 -32.60 16.08 16.01 0.26 -32.35 16 15 C 0.07 2.40 4.43 71.24 0.32 2.72 16 16 O -0.30 -10.63 9.71 -74.04 -0.72 -11.35 16 17 C 0.29 8.26 7.42 84.92 0.63 8.89 16 18 C -0.23 -4.77 10.20 21.54 0.22 -4.55 16 19 C -0.15 -1.95 11.41 67.09 0.77 -1.18 16 20 S 0.31 5.05 23.71 -56.49 -1.34 3.71 16 21 N -0.57 -14.56 11.14 -176.10 -1.96 -16.52 16 22 H 0.05 1.37 7.22 -2.39 -0.02 1.35 16 23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.08 2.67 8.07 -2.38 -0.02 2.65 16 26 H 0.10 2.42 6.44 -2.39 -0.02 2.40 16 27 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 28 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.11 3.26 7.18 -2.39 -0.02 3.24 16 31 H 0.11 3.24 7.40 -2.39 -0.02 3.22 16 32 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.23 0.76 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -78.76 304.94 2.64 -76.12 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.12 Total: 4.11 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.00 Total: 13.14 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -3.70 Total: -100.88 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -0.46 Total: -43.69 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.34 Total: 3.71 kcal Total: -78.76 2.64 -76.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464389962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.315 kcal (2) G-P(sol) polarization free energy of solvation -78.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds