Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35911 * 116.99940 * 2 1 4 4 C 1.39712 * 119.74340 * 0.20289 * 3 2 1 5 5 C 1.36091 * 120.98584 * 180.24205 * 4 3 2 6 6 C 1.40495 * 120.03920 * 359.52936 * 5 4 3 7 7 N 1.34016 * 120.63764 * 180.27861 * 6 5 4 8 8 C 1.30824 * 122.00112 * 180.02562 * 7 6 5 9 9 C 1.40478 * 121.62758 * 359.95544 * 8 7 6 10 10 C 1.43200 * 120.35651 * 180.02562 * 9 8 7 11 11 N 8.29960 * 149.34996 * 0.03943 * 2 1 3 12 12 C 1.40086 * 119.29389 * 0.02562 * 9 8 7 13 13 O 1.35195 * 121.10140 * 180.02562 * 12 9 8 14 14 C 1.34773 * 117.00216 * 269.98235 * 13 12 9 15 15 H 1.08004 * 119.99723 * 359.97438 * 14 13 12 16 16 C 1.38749 * 119.99931 * 180.02562 * 14 13 12 17 17 N 1.31477 * 119.99571 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00166 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47290 * 89.99846 * 18 16 14 20 20 H 1.48504 * 109.47213 * 210.00252 * 18 16 14 21 21 H 1.48505 * 109.47099 * 329.99817 * 18 16 14 22 22 C 1.41399 * 117.79643 * 0.02562 * 12 9 8 23 23 C 1.37744 * 119.74223 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47456 * 300.00051 * 1 2 3 25 25 H 1.09002 * 109.46950 * 60.00259 * 1 2 3 26 26 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.51475 * 0.05004 * 4 3 2 28 28 H 1.08002 * 119.98497 * 179.81213 * 5 4 3 29 29 H 1.07994 * 119.18369 * 179.97438 * 8 7 6 30 30 H 0.97000 * 119.99399 * 179.97438 * 17 16 14 31 31 H 1.08000 * 120.25281 * 0.02762 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2799 2.3793 0.0043 5 6 1.8712 3.6050 -0.0005 6 6 3.2723 3.7099 0.0000 7 7 3.8672 4.9108 0.0009 8 6 5.1691 5.0395 0.0009 9 6 6.0199 3.9217 0.0010 10 6 7.4414 4.0942 0.0015 11 7 8.5692 4.2311 0.0029 12 6 5.4628 2.6363 0.0004 13 8 6.2473 1.5352 0.0009 14 6 6.6030 1.0368 -1.1996 15 1 6.2618 1.5155 -2.1057 16 6 7.4065 -0.0921 -1.2717 17 7 7.7531 -0.5786 -2.4429 18 14 7.9960 -0.9205 0.2954 19 1 7.0116 -1.9519 0.7104 20 1 9.3125 -1.5626 0.0508 21 1 8.1326 0.0946 1.3707 22 6 4.0529 2.5287 -0.0007 23 6 3.4219 1.2769 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2022 2.3088 0.0084 28 1 1.2633 4.4976 -0.0002 29 1 5.6003 6.0296 0.0013 30 1 8.3151 -1.3675 -2.4932 31 1 4.0101 0.3711 0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473052546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = 27.162997 kcal Electronic energy + Delta-G solvation = -19557.746163 eV Core-core repulsion = 16385.125701 eV Total energy + Delta-G solvation = -3172.620463 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85077 -39.25127 -37.66432 -36.33425 -35.35795 -32.67760 -31.79427 -30.47157 -29.57807 -27.15625 -25.50537 -23.94158 -23.45471 -21.49032 -19.50994 -18.33858 -18.09016 -17.67317 -16.86911 -15.81923 -15.72527 -15.27981 -14.64238 -14.26370 -13.88704 -13.79780 -13.69391 -12.95475 -12.87571 -12.82560 -12.50189 -12.39263 -12.23591 -12.20401 -11.98949 -11.31386 -11.02655 -10.58664 -10.57155 -10.41837 -9.90843 -9.69826 -9.37807 -8.60906 -8.45514 -7.55985 -6.31317 -4.10916 0.43223 0.85272 2.04064 2.79714 3.17680 3.25370 3.28569 3.34473 3.43896 3.75388 4.21083 4.27477 4.30262 4.47191 4.56948 4.75896 4.85847 4.96174 5.05461 5.07229 5.11454 5.34024 5.39736 5.51617 5.77494 5.85796 6.05402 6.16638 6.28229 6.38570 6.68366 6.73289 7.42508 7.61641 7.97131 8.03190 8.12784 9.00744 9.48920 10.78245 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.008254 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.727035 B = 3391.482779 C = 4979.738495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.103 3.897 4 C -0.159 4.159 5 C -0.072 4.072 6 C 0.126 3.874 7 N -0.489 5.489 8 C 0.184 3.816 9 C -0.133 4.133 10 C 0.278 3.722 11 N -0.422 5.422 12 C 0.273 3.727 13 O -0.262 6.262 14 C -0.380 4.380 15 H 0.093 0.907 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.262 1.262 22 C -0.098 4.098 23 C -0.091 4.091 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.165 0.835 30 H 0.277 0.723 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 5.200 5.429 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.058 3.942 4 C -0.179 4.179 5 C -0.090 4.090 6 C 0.006 3.994 7 N -0.197 5.197 8 C 0.008 3.992 9 C -0.140 4.140 10 C -0.037 4.037 11 N -0.098 5.098 12 C 0.216 3.784 13 O -0.174 6.174 14 C -0.455 4.455 15 H 0.111 0.889 16 C -0.134 4.134 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.186 1.186 22 C -0.101 4.101 23 C -0.110 4.110 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.088 0.912 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.133 5.633 5.498 16.177 hybrid contribution 0.174 -1.167 0.433 1.257 sum -13.960 4.467 5.931 15.811 Atomic orbital electron populations 1.23045 0.78831 1.03881 1.01083 1.86145 1.20936 1.26540 1.88991 1.18871 0.92011 0.84183 0.99139 1.21074 1.00271 0.92058 1.04478 1.20488 0.92016 0.97528 0.99004 1.18770 0.93969 0.87577 0.99106 1.67897 1.11173 1.24892 1.15747 1.22669 0.87892 0.97202 0.91433 1.17583 0.86837 0.94897 1.14710 1.24925 0.91974 0.93377 0.93472 1.81111 1.11412 1.08007 1.09225 1.19235 0.88360 0.86841 0.83961 1.83215 1.64587 1.38254 1.31378 1.20303 1.33184 1.12039 0.79925 0.88884 1.24258 0.95761 0.95745 0.97631 1.69589 1.36573 1.23662 1.22966 0.86325 0.78313 0.79984 0.83241 1.19785 1.20852 1.18575 1.18964 0.93095 0.94206 1.03824 1.20505 0.91364 0.98229 1.00948 0.92804 0.92712 0.88360 0.84817 0.84265 0.81767 0.91235 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.80 101.05 0.99 1.22 16 2 O -0.31 -4.40 10.48 -19.46 -0.20 -4.60 16 3 C 0.10 1.55 6.67 -39.21 -0.26 1.28 16 4 C -0.16 -1.92 8.94 -39.80 -0.36 -2.28 16 5 C -0.07 -0.93 9.95 -39.50 -0.39 -1.32 16 6 C 0.13 2.03 6.61 -84.79 -0.56 1.47 16 7 N -0.49 -7.63 10.29 -10.72 -0.11 -7.74 16 8 C 0.18 2.78 10.87 -17.14 -0.19 2.59 16 9 C -0.13 -2.49 5.77 -106.43 -0.61 -3.10 16 10 C 0.28 5.67 14.95 -22.47 -0.34 5.34 16 11 N -0.42 -9.25 18.54 41.84 0.78 -8.47 16 12 C 0.27 5.72 5.66 -37.69 -0.21 5.51 16 13 O -0.26 -6.49 7.31 1.89 0.01 -6.48 16 14 C -0.38 -10.43 10.28 30.92 0.32 -10.12 16 15 H 0.09 2.71 7.99 -52.48 -0.42 2.29 16 16 C 0.07 1.91 5.49 -17.51 -0.10 1.81 16 17 N -0.89 -26.05 13.96 55.48 0.77 -25.28 16 18 Si 0.90 22.06 28.62 -169.99 -4.86 17.19 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.10 -1.82 5.75 -106.69 -0.61 -2.43 16 23 C -0.09 -1.65 9.55 -39.03 -0.37 -2.02 16 24 H 0.05 0.38 7.63 -51.93 -0.40 -0.02 16 25 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.13 1.14 6.23 -52.49 -0.33 0.81 16 28 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.17 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.15 3.04 7.66 -52.49 -0.40 2.63 16 LS Contribution 290.54 15.07 4.38 4.38 Total: -1.00 -31.72 290.54 -4.28 -35.99 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -2.35 Total: -2.95 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.69 Total: -2.04 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 1.44 Total: -41.49 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.19 Total: -11.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.72 -4.28 -35.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473052546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.155 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds