Wall clock time and date at job start Mon Mar 30 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35911 * 116.99940 * 2 1 4 4 C 1.39712 * 119.74340 * 0.20289 * 3 2 1 5 5 C 1.36091 * 120.98584 * 180.24205 * 4 3 2 6 6 C 1.40495 * 120.03920 * 359.52936 * 5 4 3 7 7 N 1.34016 * 120.63764 * 180.27861 * 6 5 4 8 8 C 1.30824 * 122.00112 * 180.02562 * 7 6 5 9 9 C 1.40478 * 121.62758 * 359.95544 * 8 7 6 10 10 C 1.43200 * 120.35651 * 180.02562 * 9 8 7 11 11 N 8.29960 * 149.34996 * 0.03943 * 2 1 3 12 12 C 1.40086 * 119.29389 * 0.02562 * 9 8 7 13 13 O 1.35195 * 121.10140 * 180.02562 * 12 9 8 14 14 C 1.34773 * 117.00216 * 269.98235 * 13 12 9 15 15 H 1.08004 * 119.99723 * 359.97438 * 14 13 12 16 16 C 1.38749 * 119.99931 * 180.02562 * 14 13 12 17 17 N 1.31477 * 119.99571 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00166 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47290 * 89.99846 * 18 16 14 20 20 H 1.48504 * 109.47213 * 210.00252 * 18 16 14 21 21 H 1.48505 * 109.47099 * 329.99817 * 18 16 14 22 22 C 1.41399 * 117.79643 * 0.02562 * 12 9 8 23 23 C 1.37744 * 119.74223 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47456 * 300.00051 * 1 2 3 25 25 H 1.09002 * 109.46950 * 60.00259 * 1 2 3 26 26 H 1.09000 * 109.47507 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.51475 * 0.05004 * 4 3 2 28 28 H 1.08002 * 119.98497 * 179.81213 * 5 4 3 29 29 H 1.07994 * 119.18369 * 179.97438 * 8 7 6 30 30 H 0.97000 * 119.99399 * 179.97438 * 17 16 14 31 31 H 1.08000 * 120.25281 * 0.02762 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2799 2.3793 0.0043 5 6 1.8712 3.6050 -0.0005 6 6 3.2723 3.7099 0.0000 7 7 3.8672 4.9108 0.0009 8 6 5.1691 5.0395 0.0009 9 6 6.0199 3.9217 0.0010 10 6 7.4414 4.0942 0.0015 11 7 8.5692 4.2311 0.0029 12 6 5.4628 2.6363 0.0004 13 8 6.2473 1.5352 0.0009 14 6 6.6030 1.0368 -1.1996 15 1 6.2618 1.5155 -2.1057 16 6 7.4065 -0.0921 -1.2717 17 7 7.7531 -0.5786 -2.4429 18 14 7.9960 -0.9205 0.2954 19 1 7.0116 -1.9519 0.7104 20 1 9.3125 -1.5626 0.0508 21 1 8.1326 0.0946 1.3707 22 6 4.0529 2.5287 -0.0007 23 6 3.4219 1.2769 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2022 2.3088 0.0084 28 1 1.2633 4.4976 -0.0002 29 1 5.6003 6.0296 0.0013 30 1 8.3151 -1.3675 -2.4932 31 1 4.0101 0.3711 0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473052546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:34 Heat of formation + Delta-G solvation = 5.859407 kcal Electronic energy + Delta-G solvation = -19558.669956 eV Core-core repulsion = 16385.125701 eV Total energy + Delta-G solvation = -3173.544256 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.16573 -40.46209 -39.27645 -37.83947 -36.69936 -34.60378 -33.37910 -31.76498 -30.77120 -28.03106 -27.42888 -25.38315 -24.66846 -22.88405 -20.78225 -20.30115 -19.32605 -19.30190 -18.19225 -17.24660 -16.68112 -16.53116 -16.31834 -15.69706 -15.34892 -15.04284 -14.91457 -14.79728 -14.42139 -14.28865 -14.24622 -13.98813 -13.74797 -13.41492 -12.95845 -12.94574 -12.51755 -12.28611 -11.95594 -11.94641 -11.61169 -11.12758 -10.77752 -10.71964 -9.71715 -8.82862 -8.47946 -6.27274 -0.95512 -0.38749 0.71481 1.26289 1.28715 1.44847 1.51731 1.57787 2.24627 2.27290 2.32831 2.79720 2.81176 2.86137 3.12454 3.29635 3.60879 3.76691 3.87716 3.98557 4.23851 4.39671 4.44169 4.49564 4.66524 4.79946 4.84059 4.96419 5.07590 5.20082 5.32642 5.45857 5.56888 5.95140 6.38898 6.41650 6.76886 6.85248 7.49798 8.65775 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.008254 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.727035 B = 3391.482779 C = 4979.738495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.338 6.338 3 C 0.123 3.877 4 C -0.143 4.143 5 C -0.055 4.055 6 C 0.114 3.886 7 N -0.472 5.472 8 C 0.191 3.809 9 C -0.132 4.132 10 C 0.289 3.711 11 N -0.454 5.454 12 C 0.224 3.776 13 O -0.279 6.279 14 C -0.364 4.364 15 H 0.061 0.939 16 C 0.014 3.986 17 N -0.928 5.928 18 Si 0.954 3.046 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.270 1.270 22 C -0.105 4.105 23 C -0.142 4.142 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.208 0.792 30 H 0.281 0.719 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.969 6.658 6.527 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.252 6.252 3 C 0.078 3.922 4 C -0.163 4.163 5 C -0.074 4.074 6 C -0.007 4.007 7 N -0.179 5.179 8 C 0.015 3.985 9 C -0.138 4.138 10 C -0.026 4.026 11 N -0.131 5.131 12 C 0.168 3.832 13 O -0.191 6.191 14 C -0.439 4.439 15 H 0.079 0.921 16 C -0.183 4.183 17 N -0.572 5.572 18 Si 0.777 3.223 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.195 1.195 22 C -0.108 4.108 23 C -0.162 4.162 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.133 0.867 27 H 0.201 0.799 28 H 0.197 0.803 29 H 0.224 0.776 30 H 0.091 0.909 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.640 7.103 6.606 20.131 hybrid contribution 0.940 -1.566 0.067 1.828 sum -16.700 5.537 6.673 18.817 Atomic orbital electron populations 1.23493 0.75645 1.05905 1.03128 1.86136 1.24261 1.26437 1.88339 1.18998 0.91107 0.85820 0.96310 1.21515 1.02383 0.90233 1.02126 1.20968 0.90503 0.99382 0.96502 1.19203 0.95473 0.86692 0.99295 1.68021 1.11047 1.24273 1.14583 1.23198 0.87348 0.97574 0.90428 1.17791 0.86250 0.95236 1.14545 1.25275 0.92389 0.92412 0.92561 1.81100 1.12289 1.09172 1.10494 1.19643 0.89433 0.86401 0.87770 1.83178 1.65760 1.40197 1.30005 1.20081 1.31975 1.11544 0.80324 0.92137 1.25001 0.96333 0.96555 1.00422 1.69679 1.38072 1.24676 1.24751 0.85450 0.78443 0.79030 0.79383 1.18318 1.19780 1.19500 1.18966 0.92047 0.95489 1.04294 1.20274 0.93074 0.96950 1.05940 0.90372 0.90793 0.86725 0.79886 0.80257 0.77568 0.90879 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.80 113.37 1.11 1.27 16 2 O -0.34 -8.93 10.48 -92.55 -0.97 -9.90 16 3 C 0.12 3.51 6.67 22.51 0.15 3.66 16 4 C -0.14 -2.81 8.94 22.13 0.20 -2.61 16 5 C -0.06 -1.18 9.95 22.32 0.22 -0.96 16 6 C 0.11 3.42 6.61 40.19 0.27 3.69 16 7 N -0.47 -13.38 10.29 -187.82 -1.93 -15.31 16 8 C 0.19 5.39 10.87 85.39 0.93 6.32 16 9 C -0.13 -4.95 5.77 -21.04 -0.12 -5.07 16 10 C 0.29 12.01 14.95 88.33 1.32 13.33 16 11 N -0.45 -20.36 18.54 19.00 0.35 -20.01 16 12 C 0.22 9.75 5.66 23.50 0.13 9.89 16 13 O -0.28 -14.59 7.31 -16.16 -0.12 -14.70 16 14 C -0.36 -21.19 10.28 67.94 0.70 -20.49 16 15 H 0.06 3.80 7.99 -2.91 -0.02 3.78 16 16 C 0.01 0.84 5.49 84.87 0.47 1.30 16 17 N -0.93 -56.85 13.96 21.63 0.30 -56.55 16 18 Si 0.95 47.14 28.62 68.60 1.96 49.10 16 19 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -13.60 7.11 99.48 0.71 -12.90 16 22 C -0.11 -3.98 5.75 -21.20 -0.12 -4.10 16 23 C -0.14 -5.36 9.55 22.63 0.22 -5.14 16 24 H 0.08 0.69 7.63 -2.39 -0.02 0.68 16 25 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 26 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.18 1.83 6.23 -2.91 -0.02 1.81 16 28 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.21 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 31 H 0.11 5.03 7.66 -2.91 -0.02 5.01 16 Total: -1.00 -74.19 290.54 6.25 -67.94 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: 1.18 Total: -1.65 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.47 Total: 1.09 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -1.28 Total: -91.87 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.09 Total: -24.61 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.96 Total: 49.10 kcal Total: -74.19 6.25 -67.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473052546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.804 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds