Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35959 * 116.99565 * 2 1 4 4 N 1.30337 * 121.63915 * 0.02562 * 3 2 1 5 5 S 1.69586 * 107.16997 * 179.97438 * 4 3 2 6 6 C 1.72015 * 95.78241 * 359.82205 * 5 4 3 7 7 C 1.35065 * 105.60386 * 0.30213 * 6 5 4 8 8 C 1.50697 * 122.64117 * 179.91734 * 7 6 5 9 9 N 1.46895 * 109.47143 * 259.70801 * 8 7 6 10 10 C 1.47961 * 111.00270 * 170.00071 * 9 8 7 11 11 C 1.53934 * 86.18427 * 222.41862 * 10 9 8 12 12 O 1.42895 * 113.73076 * 269.25870 * 11 10 9 13 13 C 1.50696 * 113.73266 * 138.07361 * 11 10 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47958 * 110.99863 * 70.64193 * 9 8 7 22 22 H 1.08999 * 109.47452 * 60.00090 * 1 2 3 23 23 H 1.09001 * 109.46629 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46959 * 299.99388 * 1 2 3 25 25 H 1.08006 * 127.20217 * 180.22213 * 6 5 4 26 26 H 1.09005 * 109.46817 * 139.70899 * 8 7 6 27 27 H 1.08999 * 109.46747 * 19.71311 * 8 7 6 28 28 H 1.08996 * 113.76309 * 108.09300 * 10 9 8 29 29 H 1.09008 * 113.85816 * 336.74814 * 10 9 8 30 30 H 0.96697 * 114.00066 * 178.10080 * 12 11 10 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.08993 * 113.76569 * 23.26601 * 21 9 8 33 33 H 1.09005 * 113.75789 * 251.89882 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 7 1.3678 2.3243 0.0005 5 16 2.4908 3.5952 0.0010 6 6 3.8880 2.5918 0.0059 7 6 3.4243 1.3233 0.0000 8 6 4.3371 0.1242 -0.0001 9 7 4.4423 -0.4110 -1.3640 10 6 5.5078 -1.4339 -1.4516 11 6 5.8960 -0.7673 -2.7837 12 8 5.2356 -1.3269 -3.9207 13 6 7.3833 -0.6244 -2.9796 14 1 8.0645 -0.9769 -2.2192 15 6 7.8745 -0.0444 -4.1300 16 7 9.1726 0.0800 -4.3012 17 14 6.6963 0.5647 -5.4454 18 1 6.4232 -0.5302 -6.4107 19 1 5.4243 0.9936 -4.8104 20 1 7.3050 1.7150 -6.1607 21 6 5.2189 0.5007 -2.2329 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 4.9202 2.9097 0.0111 26 1 3.9307 -0.6418 0.6605 27 1 5.3255 0.4201 0.3515 28 1 5.1320 -2.4510 -1.5625 29 1 6.2697 -1.3443 -0.6772 30 1 5.4546 -0.8921 -4.7562 31 1 9.5181 0.4877 -5.1107 32 1 5.8955 1.1578 -1.6866 33 1 4.6123 1.0293 -2.9683 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = -10.952094 kcal Electronic energy + Delta-G solvation = -18902.323096 eV Core-core repulsion = 15863.493790 eV Total energy + Delta-G solvation = -3038.829306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55906 -40.67306 -37.92017 -36.57497 -34.52082 -33.16831 -30.22537 -28.85001 -27.71184 -27.02419 -24.83516 -23.46403 -21.14012 -20.85081 -19.38356 -19.03025 -18.22465 -17.95907 -17.30360 -16.77333 -16.19444 -15.95765 -15.64330 -15.22456 -14.81990 -14.64972 -14.42201 -14.14937 -13.83202 -13.48091 -12.97797 -12.86702 -12.72231 -12.45853 -12.33536 -12.09256 -12.02529 -11.85946 -11.64077 -11.19291 -10.96585 -10.60922 -10.41605 -9.60360 -9.19818 -8.43254 -6.51987 -0.32004 0.43577 0.70197 1.21716 1.27514 1.35934 1.38199 2.16434 2.27886 2.80701 3.07336 3.59599 3.61348 3.91113 4.07807 4.18887 4.27469 4.29962 4.34692 4.46012 4.55637 4.66467 4.73168 4.80404 4.82904 4.94115 5.15259 5.20922 5.35155 5.42987 6.04813 6.12189 6.23635 6.53204 6.78028 7.15741 8.72433 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.005845 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.398437 B = 4789.607884 C = 5153.908071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.299 6.299 3 C 0.320 3.680 4 N -0.562 5.562 5 S 0.311 5.689 6 C -0.172 4.172 7 C -0.178 4.178 8 C 0.093 3.907 9 N -0.472 5.472 10 C 0.031 3.969 11 C 0.181 3.819 12 O -0.559 6.559 13 C -0.542 4.542 14 H 0.054 0.946 15 C 0.028 3.972 16 N -0.927 5.927 17 Si 0.916 3.084 18 H -0.258 1.258 19 H -0.239 1.239 20 H -0.282 1.282 21 C -0.013 4.013 22 H 0.051 0.949 23 H 0.124 0.876 24 H 0.062 0.938 25 H 0.212 0.788 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.349 0.651 31 H 0.272 0.728 32 H 0.079 0.921 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.863 5.907 9.381 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.205 6.205 3 C 0.105 3.895 4 N -0.403 5.403 5 S 0.461 5.539 6 C -0.320 4.320 7 C -0.196 4.196 8 C -0.038 4.038 9 N -0.195 5.195 10 C -0.097 4.097 11 C 0.141 3.859 12 O -0.370 6.370 13 C -0.580 4.580 14 H 0.072 0.928 15 C -0.172 4.172 16 N -0.565 5.565 17 Si 0.742 3.258 18 H -0.184 1.184 19 H -0.164 1.164 20 H -0.209 1.209 21 C -0.142 4.142 22 H 0.070 0.930 23 H 0.142 0.858 24 H 0.080 0.920 25 H 0.229 0.771 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.200 0.800 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.000 6.749 9.580 19.832 hybrid contribution 1.871 -0.611 -0.915 2.170 sum -14.129 6.138 8.665 17.674 Atomic orbital electron populations 1.23138 0.75834 1.05031 1.02044 1.86355 1.23949 1.22527 1.87654 1.20134 0.90096 0.85290 0.93939 1.76391 1.27639 1.01779 1.34511 1.83604 0.89423 1.11692 1.69224 1.26744 1.07793 0.96171 1.01309 1.19152 0.91564 0.97005 1.11889 1.21115 0.96832 0.93391 0.92414 1.68616 1.35869 1.07089 1.07913 1.23969 0.92565 0.97640 0.95534 1.20684 0.89149 0.91257 0.84849 1.86467 1.71490 1.62102 1.16977 1.21577 0.91057 1.39998 1.05324 0.92803 1.25753 0.96517 0.94856 1.00118 1.70003 1.13629 1.44452 1.28434 0.86372 0.80215 0.79081 0.80169 1.18400 1.16379 1.20895 1.24763 0.95207 0.97139 0.97119 0.92972 0.85766 0.91950 0.77079 0.89084 0.91769 0.89698 0.89625 0.79970 0.91913 0.90263 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.47 113.37 1.19 1.92 16 2 O -0.30 -8.86 10.13 -93.08 -0.94 -9.81 16 3 C 0.32 9.62 7.40 84.92 0.63 10.25 16 4 N -0.56 -16.10 11.14 -176.10 -1.96 -18.06 16 5 S 0.31 7.03 23.71 -56.49 -1.34 5.70 16 6 C -0.17 -4.06 11.05 67.09 0.74 -3.32 16 7 C -0.18 -5.11 4.90 -20.59 -0.10 -5.22 16 8 C 0.09 2.82 4.85 85.56 0.41 3.23 16 9 N -0.47 -17.69 6.25 -915.39 -5.72 -23.42 16 10 C 0.03 1.25 7.36 86.41 0.64 1.88 16 11 C 0.18 8.45 1.05 -10.89 -0.01 8.44 16 12 O -0.56 -27.18 13.32 -148.98 -1.98 -29.17 16 13 C -0.54 -29.33 9.20 25.60 0.24 -29.10 16 14 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 15 C 0.03 1.53 5.47 84.66 0.46 2.00 16 16 N -0.93 -54.35 13.96 21.45 0.30 -54.05 16 17 Si 0.92 40.81 24.34 68.60 1.67 42.48 16 18 H -0.26 -11.05 7.06 99.48 0.70 -10.34 16 19 H -0.24 -10.04 5.28 99.48 0.52 -9.52 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.01 -0.52 5.98 86.41 0.52 -0.01 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.21 3.86 8.06 -2.91 -0.02 3.84 16 26 H 0.09 2.61 8.07 -2.38 -0.02 2.59 16 27 H 0.06 1.78 7.63 -2.39 -0.02 1.77 16 28 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.09 3.17 7.75 -2.38 -0.02 3.15 16 30 H 0.35 16.12 3.31 -74.06 -0.25 15.88 16 31 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.08 3.06 7.73 -2.39 -0.02 3.04 16 33 H 0.06 2.66 6.98 -2.38 -0.02 2.64 16 Total: -1.00 -65.45 288.47 -4.57 -70.02 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.70 Total: 26.23 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 4.71 Total: -9.92 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -7.39 Total: -95.53 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -2.93 Total: -38.97 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.67 Total: 42.48 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -1.34 Total: 5.70 kcal Total: -65.45 -4.57 -70.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.066 kcal (2) G-P(sol) polarization free energy of solvation -65.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds