Wall clock time and date at job start Mon Mar 30 2020 02:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 120.00138 * 2 1 4 4 C 1.50706 * 109.46949 * 270.00242 * 3 2 1 5 5 H 1.07999 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47264 * 120.00115 * 8 6 4 11 11 H 1.48500 * 109.46969 * 239.99720 * 8 6 4 12 12 C 1.39677 * 119.99671 * 180.02562 * 2 1 3 13 13 C 1.38915 * 120.07310 * 179.71809 * 12 2 1 14 14 C 1.38101 * 119.92539 * 179.76336 * 13 12 2 15 15 C 1.38288 * 120.07288 * 0.51702 * 14 13 12 16 16 S 1.76196 * 119.92303 * 179.71977 * 15 14 13 17 17 N 1.65598 * 107.21993 * 270.01602 * 16 15 14 18 18 O 1.42093 * 106.40554 * 23.56289 * 16 15 14 19 19 O 1.42105 * 106.39926 * 156.47923 * 16 15 14 20 20 C 1.38286 * 120.15033 * 359.73842 * 15 14 13 21 21 C 1.38101 * 120.07469 * 0.02562 * 20 15 14 22 22 H 1.08991 * 109.46955 * 89.99639 * 1 2 3 23 23 H 1.08995 * 109.47080 * 209.99999 * 1 2 3 24 24 H 1.09001 * 109.46349 * 329.99612 * 1 2 3 25 25 H 1.09000 * 109.46609 * 150.00422 * 3 2 1 26 26 H 1.09000 * 109.47175 * 30.00216 * 3 2 1 27 27 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 28 28 H 1.08002 * 120.03297 * 0.02562 * 13 12 2 29 29 H 1.08001 * 119.96366 * 180.25592 * 14 13 12 30 30 H 0.97001 * 120.00352 * 149.99629 * 17 16 15 31 31 H 0.97004 * 119.99806 * 330.00562 * 17 16 15 32 32 H 1.07999 * 119.96200 * 179.97438 * 20 15 14 33 33 H 1.08002 * 120.04127 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2418 6 6 3.1270 2.8775 -1.6727 7 7 3.5544 3.6175 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8007 4.7382 -3.6665 11 1 4.9001 3.5246 -3.6680 12 6 2.1634 -1.2097 -0.0005 13 6 3.5525 -1.2115 -0.0065 14 6 4.2399 -2.4093 -0.0020 15 6 3.5469 -3.6060 -0.0025 16 16 4.4278 -5.1319 -0.0043 17 7 4.6723 -5.5550 -1.5866 18 8 5.7109 -4.8552 0.5399 19 8 3.5463 -6.1048 0.5395 20 6 2.1640 -3.6078 -0.0020 21 6 1.4704 -2.4136 -0.0015 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3632 0.8900 0.5139 25 1 3.1500 1.1382 0.5138 26 1 1.6086 2.0284 0.5139 27 1 4.0312 4.4434 -0.8504 28 1 4.0943 -0.2772 -0.0102 29 1 5.3199 -2.4115 -0.0024 30 1 5.4552 -6.0708 -1.8354 31 1 4.0326 -5.2868 -2.2647 32 1 1.6258 -4.5441 -0.0028 33 1 0.3904 -2.4156 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515299535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:23 Heat of formation + Delta-G solvation = -46.968183 kcal Electronic energy + Delta-G solvation = -18329.478073 eV Core-core repulsion = 15289.086993 eV Total energy + Delta-G solvation = -3040.391080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16695 -36.89722 -35.90643 -35.57372 -33.07817 -32.88659 -30.76976 -29.79241 -28.04203 -25.40052 -23.33405 -21.92193 -20.59854 -19.24441 -18.10709 -17.21446 -16.80045 -16.63914 -15.85842 -15.47767 -14.92659 -14.40907 -14.34885 -13.96119 -13.23419 -13.10368 -12.75685 -12.37055 -12.30191 -11.98485 -11.88377 -11.79601 -11.67940 -11.43862 -11.10333 -10.88870 -10.64044 -10.50333 -10.27781 -10.17681 -10.04878 -9.33536 -8.67410 -8.62560 -6.95003 -6.23068 -4.34177 0.73352 1.49946 1.83403 3.16071 3.24826 3.28184 3.42357 3.75946 3.85360 4.19367 4.27896 4.81311 5.06624 5.18244 5.24434 5.50770 5.69328 5.84278 5.94368 6.03024 6.04169 6.11701 6.28310 6.45312 6.61040 6.69592 6.90827 7.09237 7.09691 7.25414 7.63201 7.89213 7.96582 8.08611 8.73175 9.33487 10.80520 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.004891 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.409027 B = 5723.761852 C = 6294.593197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.597 5.597 3 C 0.241 3.759 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.288 3.712 13 C -0.206 4.206 14 C 0.023 3.977 15 C -0.755 4.755 16 S 2.707 3.293 17 N -1.254 6.254 18 O -0.977 6.977 19 O -0.979 6.979 20 C 0.021 3.979 21 C -0.239 4.239 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.415 0.585 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -12.893 -1.332 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.298 5.298 3 C 0.122 3.878 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.175 3.825 13 C -0.229 4.229 14 C 0.002 3.998 15 C -0.849 4.849 16 S 2.799 3.201 17 N -0.925 5.925 18 O -0.967 6.967 19 O -0.968 6.968 20 C 0.001 3.999 21 C -0.263 4.263 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.244 0.756 31 H 0.242 0.758 32 H 0.147 0.853 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.774 -12.887 -0.338 13.013 hybrid contribution -0.166 1.121 -1.744 2.080 sum -1.940 -11.766 -2.082 12.105 Atomic orbital electron populations 1.21635 0.80698 1.01748 1.01191 1.47503 1.05186 1.05016 1.72046 1.19505 0.92364 0.78288 0.97649 1.21517 1.37045 1.06832 0.92209 0.92080 1.24964 0.95156 0.96149 0.97672 1.69927 1.37882 1.14332 1.30865 0.86419 0.78168 0.78531 0.84222 1.19718 1.20821 1.20689 1.18269 0.91815 0.86114 0.86309 1.21018 0.92648 0.99183 1.10086 1.20529 0.99221 0.90566 0.89475 1.29714 1.05582 1.17917 1.31722 1.01034 0.73303 0.73736 0.72028 1.53253 1.37290 1.72818 1.29149 1.93552 1.40778 1.85643 1.76707 1.93555 1.67366 1.59391 1.76535 1.20448 0.91738 0.97887 0.89849 1.20694 0.99603 0.91241 1.14716 0.93225 0.92225 0.91355 0.94153 0.94588 0.92452 0.84004 0.85057 0.75642 0.75751 0.85269 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 10.23 59.85 0.61 2.04 16 2 N -0.60 -11.74 2.99 -180.99 -0.54 -12.28 16 3 C 0.24 5.66 4.95 -5.19 -0.03 5.63 16 4 C -0.54 -13.86 9.39 -34.44 -0.32 -14.18 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 7 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.29 5.40 6.55 -83.78 -0.55 4.85 16 13 C -0.21 -3.91 9.21 -39.38 -0.36 -4.28 16 14 C 0.02 0.38 9.51 -39.61 -0.38 0.01 16 15 C -0.76 -11.34 5.98 -39.55 -0.24 -11.57 16 16 S 2.71 35.74 6.28 -107.50 -0.67 35.07 16 17 N -1.25 -11.23 9.52 60.35 0.57 -10.66 16 18 O -0.98 -15.80 17.28 -57.17 -0.99 -16.79 16 19 O -0.98 -15.39 17.28 -57.17 -0.99 -16.37 16 20 C 0.02 0.32 9.51 -39.61 -0.38 -0.06 16 21 C -0.24 -3.80 9.21 -39.38 -0.36 -4.17 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.77 6.20 -51.93 -0.32 0.45 16 24 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 25 H 0.04 1.00 6.21 -51.93 -0.32 0.68 16 26 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.14 2.92 6.15 -52.49 -0.32 2.60 16 29 H 0.13 1.97 7.61 -52.49 -0.40 1.57 16 30 H 0.41 2.90 8.96 -34.47 -0.31 2.59 16 31 H 0.42 2.95 8.96 -34.47 -0.31 2.64 16 32 H 0.13 1.59 7.61 -52.49 -0.40 1.19 16 33 H 0.12 1.69 6.14 -52.49 -0.32 1.37 16 LS Contribution 295.38 15.07 4.45 4.45 Total: -1.00 -32.45 295.38 -8.04 -40.49 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.49 Total: 4.67 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.10 Total: -20.16 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.77 Total: -46.73 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.98 Total: -33.17 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 35.74 SS G_CDS: -0.67 Total: 35.07 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.45 -8.04 -40.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515299535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.476 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds