Wall clock time and date at job start Mon Mar 30 2020 02:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 120.00138 * 2 1 4 4 C 1.50706 * 109.46949 * 270.00242 * 3 2 1 5 5 H 1.07999 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47264 * 120.00115 * 8 6 4 11 11 H 1.48500 * 109.46969 * 239.99720 * 8 6 4 12 12 C 1.39677 * 119.99671 * 180.02562 * 2 1 3 13 13 C 1.38915 * 120.07310 * 179.71809 * 12 2 1 14 14 C 1.38101 * 119.92539 * 179.76336 * 13 12 2 15 15 C 1.38288 * 120.07288 * 0.51702 * 14 13 12 16 16 S 1.76196 * 119.92303 * 179.71977 * 15 14 13 17 17 N 1.65598 * 107.21993 * 270.01602 * 16 15 14 18 18 O 1.42093 * 106.40554 * 23.56289 * 16 15 14 19 19 O 1.42105 * 106.39926 * 156.47923 * 16 15 14 20 20 C 1.38286 * 120.15033 * 359.73842 * 15 14 13 21 21 C 1.38101 * 120.07469 * 0.02562 * 20 15 14 22 22 H 1.08991 * 109.46955 * 89.99639 * 1 2 3 23 23 H 1.08995 * 109.47080 * 209.99999 * 1 2 3 24 24 H 1.09001 * 109.46349 * 329.99612 * 1 2 3 25 25 H 1.09000 * 109.46609 * 150.00422 * 3 2 1 26 26 H 1.09000 * 109.47175 * 30.00216 * 3 2 1 27 27 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 28 28 H 1.08002 * 120.03297 * 0.02562 * 13 12 2 29 29 H 1.08001 * 119.96366 * 180.25592 * 14 13 12 30 30 H 0.97001 * 120.00352 * 149.99629 * 17 16 15 31 31 H 0.97004 * 119.99806 * 330.00562 * 17 16 15 32 32 H 1.07999 * 119.96200 * 179.97438 * 20 15 14 33 33 H 1.08002 * 120.04127 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2418 6 6 3.1270 2.8775 -1.6727 7 7 3.5544 3.6175 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8007 4.7382 -3.6665 11 1 4.9001 3.5246 -3.6680 12 6 2.1634 -1.2097 -0.0005 13 6 3.5525 -1.2115 -0.0065 14 6 4.2399 -2.4093 -0.0020 15 6 3.5469 -3.6060 -0.0025 16 16 4.4278 -5.1319 -0.0043 17 7 4.6723 -5.5550 -1.5866 18 8 5.7109 -4.8552 0.5399 19 8 3.5463 -6.1048 0.5395 20 6 2.1640 -3.6078 -0.0020 21 6 1.4704 -2.4136 -0.0015 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3632 0.8900 0.5139 25 1 3.1500 1.1382 0.5138 26 1 1.6086 2.0284 0.5139 27 1 4.0312 4.4434 -0.8504 28 1 4.0943 -0.2772 -0.0102 29 1 5.3199 -2.4115 -0.0024 30 1 5.4552 -6.0708 -1.8354 31 1 4.0326 -5.2868 -2.2647 32 1 1.6258 -4.5441 -0.0028 33 1 0.3904 -2.4156 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515299535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:22 Heat of formation + Delta-G solvation = -71.629236 kcal Electronic energy + Delta-G solvation = -18330.547457 eV Core-core repulsion = 15289.086993 eV Total energy + Delta-G solvation = -3041.460464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52533 -38.09270 -37.36171 -36.77608 -34.82284 -33.91899 -32.11598 -31.19212 -29.70061 -26.92914 -25.00159 -23.27144 -22.02055 -20.33813 -19.25462 -18.70804 -18.20414 -17.94828 -17.22965 -16.72795 -16.45171 -15.85144 -15.66634 -15.45211 -14.66323 -14.48339 -14.16203 -13.99079 -13.63342 -13.26482 -13.14594 -13.10048 -13.05299 -12.95718 -12.75093 -12.61555 -12.28644 -11.87868 -11.76674 -11.66461 -11.17713 -10.93391 -10.67788 -9.94524 -8.54489 -8.11181 -6.42082 -0.36727 0.19927 0.51700 1.35960 1.38430 1.49463 2.26761 2.36967 2.44786 2.65677 2.99179 3.03465 3.64800 3.95114 4.02023 4.27332 4.44062 4.57217 4.67351 4.72419 4.87457 4.91064 5.05496 5.10742 5.23208 5.34476 5.38018 5.40281 5.62166 5.91597 5.99015 6.30159 6.46665 6.64564 6.73985 7.29750 8.79400 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.025052 B = 0.004891 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.409027 B = 5723.761852 C = 6294.593197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.613 5.613 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.264 3.736 13 C -0.234 4.234 14 C 0.021 3.979 15 C -0.751 4.751 16 S 2.740 3.260 17 N -1.235 6.235 18 O -1.005 7.005 19 O -0.997 6.997 20 C 0.024 3.976 21 C -0.233 4.233 22 H 0.051 0.949 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.268 0.732 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.428 0.572 31 H 0.428 0.572 32 H 0.162 0.838 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -15.047 -2.544 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.315 5.315 3 C 0.135 3.865 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.154 3.846 13 C -0.258 4.258 14 C 0.000 4.000 15 C -0.843 4.843 16 S 2.830 3.170 17 N -0.913 5.913 18 O -0.995 6.995 19 O -0.986 6.986 20 C 0.004 3.996 21 C -0.256 4.256 22 H 0.069 0.931 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.130 0.870 29 H 0.159 0.841 30 H 0.260 0.740 31 H 0.258 0.742 32 H 0.180 0.820 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.523 -15.064 -1.559 15.354 hybrid contribution 0.106 1.632 -1.353 2.123 sum -2.417 -13.432 -2.912 13.955 Atomic orbital electron populations 1.21805 0.78430 1.03356 1.01769 1.47333 1.06471 1.03936 1.73750 1.19003 0.91512 0.79912 0.96027 1.21737 1.36672 1.06730 0.93047 0.92880 1.25759 0.94977 0.96295 1.01455 1.70030 1.38777 1.14827 1.32834 0.85438 0.78009 0.78207 0.79609 1.19290 1.20143 1.20390 1.18532 0.91827 0.86783 0.87505 1.20941 0.93374 0.98953 1.12493 1.20656 0.99865 0.90440 0.89035 1.30063 1.06210 1.18103 1.29909 1.00003 0.71994 0.72486 0.72490 1.52790 1.38253 1.72496 1.27800 1.93519 1.42073 1.85802 1.78123 1.93540 1.67884 1.59477 1.77729 1.20878 0.91667 0.98790 0.88284 1.20987 1.00990 0.90245 1.13397 0.93055 0.89053 0.91370 0.96517 0.96419 0.92296 0.87047 0.84124 0.74013 0.74205 0.82016 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.70 10.23 127.77 1.31 4.01 16 2 N -0.61 -24.43 2.99 -726.54 -2.17 -26.61 16 3 C 0.26 12.61 4.95 85.63 0.42 13.04 16 4 C -0.54 -28.82 9.39 25.60 0.24 -28.58 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 6 C 0.01 0.80 5.46 84.66 0.46 1.26 16 7 N -0.93 -52.36 13.29 21.45 0.28 -52.07 16 8 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.26 9.88 6.55 38.21 0.25 10.13 16 13 C -0.23 -9.18 9.21 22.40 0.21 -8.97 16 14 C 0.02 0.68 9.51 22.25 0.21 0.89 16 15 C -0.75 -20.98 5.98 22.29 0.13 -20.84 16 16 S 2.74 65.32 6.28 -56.49 -0.35 64.96 16 17 N -1.24 -18.14 9.52 37.02 0.35 -17.79 16 18 O -1.01 -30.73 17.28 -128.00 -2.21 -32.94 16 19 O -1.00 -28.27 17.28 -128.00 -2.21 -30.48 16 20 C 0.02 0.63 9.51 22.25 0.21 0.85 16 21 C -0.23 -6.87 9.21 22.40 0.21 -6.67 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 2.15 6.20 -2.39 -0.01 2.13 16 24 H 0.07 2.03 7.89 -2.39 -0.02 2.01 16 25 H 0.02 0.90 6.21 -2.39 -0.01 0.88 16 26 H 0.02 0.92 7.89 -2.39 -0.02 0.90 16 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.11 4.98 6.15 -2.91 -0.02 4.96 16 29 H 0.14 4.23 7.61 -2.91 -0.02 4.21 16 30 H 0.43 4.57 8.96 -96.74 -0.87 3.70 16 31 H 0.43 4.53 8.96 -96.74 -0.87 3.66 16 32 H 0.16 3.25 7.61 -2.91 -0.02 3.22 16 33 H 0.15 3.57 6.14 -2.91 -0.02 3.55 16 Total: -1.00 -70.43 295.38 -1.21 -71.64 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.57 Total: 13.91 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 3.65 Total: -34.89 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -1.54 Total: -96.47 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -4.42 Total: -63.42 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 65.32 SS G_CDS: -0.35 Total: 64.96 kcal Total: -70.43 -1.21 -71.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515299535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.012 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds