Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86799 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47203 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47163 * 120.00214 * 3 2 1 6 6 H 1.48502 * 109.46818 * 240.00007 * 3 2 1 7 7 C 1.40313 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99452 * 159.40789 * 7 2 1 9 9 C 1.40540 * 119.99941 * 339.40587 * 7 2 1 10 10 C 1.44183 * 123.71392 * 335.67391 * 9 7 2 11 11 C 1.32771 * 114.42970 * 180.02562 * 10 9 7 12 12 S 1.75470 * 111.36211 * 0.02562 * 11 10 9 13 13 C 1.39546 * 123.71074 * 155.37838 * 9 7 2 14 14 C 1.46236 * 125.22916 * 0.02562 * 13 9 7 15 15 O 1.21751 * 120.00165 * 359.97438 * 14 13 9 16 16 N 1.34782 * 119.99823 * 180.02562 * 14 13 9 17 17 C 1.46495 * 119.99727 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46794 * 179.97438 * 17 16 14 19 19 H 1.08991 * 109.46967 * 304.99482 * 18 17 16 20 20 O 1.42895 * 109.47027 * 64.99873 * 18 17 16 21 21 C 1.53005 * 109.46821 * 184.99682 * 18 17 16 22 22 N 1.46900 * 109.46928 * 179.97438 * 21 18 17 23 23 H 0.97004 * 119.99918 * 174.01150 * 1 2 3 24 24 H 1.07995 * 122.78794 * 0.02562 * 10 9 7 25 25 H 1.07999 * 124.31808 * 179.97438 * 11 10 9 26 26 H 0.96997 * 119.99997 * 359.97438 * 16 14 13 27 27 H 1.09004 * 109.46669 * 299.99251 * 17 16 14 28 28 H 1.08997 * 109.47788 * 59.99510 * 17 16 14 29 29 H 0.96697 * 114.00659 * 59.99818 * 20 18 17 30 30 H 1.09004 * 109.46999 * 299.99838 * 21 18 17 31 31 H 1.09000 * 109.47089 * 59.99857 * 21 18 17 32 32 H 1.00907 * 111.00094 * 56.04774 * 22 21 18 33 33 H 1.00893 * 111.00115 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2753 2.7465 -0.0006 5 1 3.0941 1.6965 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0080 -1.2151 -0.0005 8 1 3.0362 -1.2448 -0.3295 9 6 1.3727 -2.3936 0.4270 10 6 0.2452 -2.4141 1.3255 11 6 -0.2101 -3.6290 1.6076 12 16 0.7202 -4.8675 0.7833 13 6 1.7599 -3.6722 0.0241 14 6 2.8647 -3.9714 -0.8861 15 8 3.5286 -3.0656 -1.3561 16 7 3.1472 -5.2500 -1.2055 17 6 4.2543 -5.5497 -2.1169 18 6 4.3599 -7.0638 -2.3103 19 1 4.4536 -7.5485 -1.3386 20 8 3.1865 -7.5427 -2.9704 21 6 5.5905 -7.3847 -3.1610 22 7 5.6923 -8.8384 -3.3462 23 1 -0.4850 -0.8355 -0.0876 24 1 -0.1927 -1.5158 1.7350 25 1 -1.0458 -3.8293 2.2617 26 1 2.6180 -5.9717 -0.8314 27 1 4.0719 -5.0720 -3.0795 28 1 5.1853 -5.1719 -1.6944 29 1 3.0394 -7.1532 -3.8431 30 1 5.4968 -6.8999 -4.1328 31 1 6.4856 -7.0193 -2.6575 32 1 4.8473 -9.2112 -3.7526 33 1 6.4976 -9.0761 -3.9056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522027885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = -80.382080 kcal Electronic energy + Delta-G solvation = -18124.350224 eV Core-core repulsion = 15082.510208 eV Total energy + Delta-G solvation = -3041.840016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.84384 -37.66842 -36.33251 -33.90774 -33.45417 -33.01840 -29.68461 -28.70524 -26.03034 -24.14973 -22.37859 -21.67738 -20.04925 -19.04288 -17.91004 -16.74457 -16.32815 -16.24139 -15.81511 -14.77208 -14.41479 -14.38319 -14.02201 -13.76766 -13.60827 -13.10989 -13.05616 -12.57302 -12.14654 -12.02533 -11.81400 -11.38095 -11.07934 -11.03442 -10.70771 -10.44466 -10.18841 -10.08101 -9.73598 -9.15231 -8.95326 -8.53038 -8.29689 -7.77224 -7.34513 -7.31576 -4.59001 2.03217 2.95404 3.05631 3.10437 3.31922 3.55520 3.67572 3.81773 3.91018 4.34041 4.40377 4.44525 4.88570 4.93814 5.07385 5.09839 5.47547 5.49745 5.82946 5.88444 6.09199 6.40790 6.77197 6.83141 6.98290 7.17798 7.18998 7.27605 7.29669 7.53078 7.77056 7.93402 8.41707 8.49840 8.74366 9.54080 9.76902 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.005071 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.361745 B = 5520.365206 C = 6539.689617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.426 4.426 8 H 0.109 0.891 9 C 0.112 3.888 10 C -0.144 4.144 11 C -0.187 4.187 12 S -0.032 6.032 13 C -0.437 4.437 14 C 0.599 3.401 15 O -0.567 6.567 16 N -0.746 5.746 17 C 0.099 3.901 18 C 0.097 3.903 19 H 0.111 0.889 20 O -0.556 6.556 21 C 0.033 3.967 22 N -0.847 5.847 23 H 0.301 0.699 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.394 0.606 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.372 0.628 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.347 0.653 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -8.633 -3.866 10.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.195 4.195 3 Si 0.896 3.104 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.456 4.456 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.177 4.177 11 C -0.321 4.321 12 S 0.224 5.776 13 C -0.556 4.556 14 C 0.396 3.604 15 O -0.450 6.450 16 N -0.400 5.400 17 C -0.026 4.026 18 C 0.037 3.963 19 H 0.128 0.872 20 O -0.360 6.360 21 C -0.099 4.099 22 N -0.377 5.377 23 H 0.115 0.885 24 H 0.149 0.851 25 H 0.159 0.841 26 H 0.228 0.772 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.219 0.781 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.060 -8.295 -2.843 10.124 hybrid contribution -0.193 -0.093 -1.270 1.288 sum 4.867 -8.389 -4.113 10.535 Atomic orbital electron populations 1.70441 1.08382 1.34531 1.26750 1.27554 0.95669 1.05234 0.91061 0.83500 0.75557 0.72692 0.78653 1.19645 1.19603 1.19469 1.20967 1.02071 0.91321 1.31259 0.87326 1.17902 0.89537 0.92379 0.90007 1.21581 0.98738 0.96921 1.00461 1.24968 1.04498 0.96685 1.05984 1.82831 1.31205 1.12402 1.51163 1.22443 1.14710 0.94537 1.23890 1.16807 0.82741 0.80958 0.79873 1.90649 1.52686 1.45204 1.56495 1.45692 1.35092 1.08453 1.50719 1.21698 0.91809 0.94208 0.94921 1.22253 0.83991 0.93034 0.97009 0.87165 1.86612 1.44822 1.69071 1.35526 1.22388 0.99555 0.89130 0.98805 1.58592 1.08779 1.11565 1.58783 0.88516 0.85142 0.84108 0.77250 0.92226 0.91488 0.78101 0.94988 0.89812 0.83996 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.70 12.48 55.57 0.69 -19.01 16 2 C 0.03 0.72 5.23 -17.28 -0.09 0.62 16 3 Si 1.07 21.34 29.98 -169.99 -5.10 16.25 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.43 -11.58 8.43 -37.93 -0.32 -11.90 16 8 H 0.11 3.12 6.15 -52.49 -0.32 2.80 16 9 C 0.11 3.00 5.41 -106.21 -0.57 2.42 16 10 C -0.14 -3.42 8.19 -39.12 -0.32 -3.74 16 11 C -0.19 -3.98 11.07 28.86 0.32 -3.66 16 12 S -0.03 -0.69 22.25 -107.50 -2.39 -3.08 16 13 C -0.44 -11.17 6.51 -35.88 -0.23 -11.41 16 14 C 0.60 14.91 7.76 -13.05 -0.10 14.81 16 15 O -0.57 -15.70 14.47 5.14 0.07 -15.63 16 16 N -0.75 -14.68 5.50 -61.75 -0.34 -15.02 16 17 C 0.10 1.56 5.31 -4.04 -0.02 1.54 16 18 C 0.10 1.19 3.27 -26.73 -0.09 1.10 16 19 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 20 O -0.56 -6.86 12.62 -35.23 -0.44 -7.31 16 21 C 0.03 0.32 6.49 -3.82 -0.02 0.30 16 22 N -0.85 -7.73 9.62 -10.36 -0.10 -7.83 16 23 H 0.30 7.74 6.22 -40.82 -0.25 7.49 16 24 H 0.13 3.05 6.77 -52.49 -0.36 2.69 16 25 H 0.14 2.50 8.06 -52.49 -0.42 2.07 16 26 H 0.39 7.38 7.55 -40.82 -0.31 7.08 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.37 3.51 9.05 45.56 0.41 3.92 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.35 3.04 8.39 -39.29 -0.33 2.71 16 33 H 0.34 2.42 9.08 -39.30 -0.36 2.06 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -30.79 297.89 -7.42 -38.21 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -2.85 Total: 18.84 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.45 Total: -9.92 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.25 Total: -41.86 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.37 Total: -22.93 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.10 Total: 16.25 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.39 Total: -3.08 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.79 -7.42 -38.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522027885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.173 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds