Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86799 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47203 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47163 * 120.00214 * 3 2 1 6 6 H 1.48502 * 109.46818 * 240.00007 * 3 2 1 7 7 C 1.40313 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99452 * 159.40789 * 7 2 1 9 9 C 1.40540 * 119.99941 * 339.40587 * 7 2 1 10 10 C 1.44183 * 123.71392 * 335.67391 * 9 7 2 11 11 C 1.32771 * 114.42970 * 180.02562 * 10 9 7 12 12 S 1.75470 * 111.36211 * 0.02562 * 11 10 9 13 13 C 1.39546 * 123.71074 * 155.37838 * 9 7 2 14 14 C 1.46236 * 125.22916 * 0.02562 * 13 9 7 15 15 O 1.21751 * 120.00165 * 359.97438 * 14 13 9 16 16 N 1.34782 * 119.99823 * 180.02562 * 14 13 9 17 17 C 1.46495 * 119.99727 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46794 * 179.97438 * 17 16 14 19 19 H 1.08991 * 109.46967 * 304.99482 * 18 17 16 20 20 O 1.42895 * 109.47027 * 64.99873 * 18 17 16 21 21 C 1.53005 * 109.46821 * 184.99682 * 18 17 16 22 22 N 1.46900 * 109.46928 * 179.97438 * 21 18 17 23 23 H 0.97004 * 119.99918 * 174.01150 * 1 2 3 24 24 H 1.07995 * 122.78794 * 0.02562 * 10 9 7 25 25 H 1.07999 * 124.31808 * 179.97438 * 11 10 9 26 26 H 0.96997 * 119.99997 * 359.97438 * 16 14 13 27 27 H 1.09004 * 109.46669 * 299.99251 * 17 16 14 28 28 H 1.08997 * 109.47788 * 59.99510 * 17 16 14 29 29 H 0.96697 * 114.00659 * 59.99818 * 20 18 17 30 30 H 1.09004 * 109.46999 * 299.99838 * 21 18 17 31 31 H 1.09000 * 109.47089 * 59.99857 * 21 18 17 32 32 H 1.00907 * 111.00094 * 56.04774 * 22 21 18 33 33 H 1.00893 * 111.00115 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2753 2.7465 -0.0006 5 1 3.0941 1.6965 1.2124 6 1 3.0941 1.6964 -1.2125 7 6 2.0080 -1.2151 -0.0005 8 1 3.0362 -1.2448 -0.3295 9 6 1.3727 -2.3936 0.4270 10 6 0.2452 -2.4141 1.3255 11 6 -0.2101 -3.6290 1.6076 12 16 0.7202 -4.8675 0.7833 13 6 1.7599 -3.6722 0.0241 14 6 2.8647 -3.9714 -0.8861 15 8 3.5286 -3.0656 -1.3561 16 7 3.1472 -5.2500 -1.2055 17 6 4.2543 -5.5497 -2.1169 18 6 4.3599 -7.0638 -2.3103 19 1 4.4536 -7.5485 -1.3386 20 8 3.1865 -7.5427 -2.9704 21 6 5.5905 -7.3847 -3.1610 22 7 5.6923 -8.8384 -3.3462 23 1 -0.4850 -0.8355 -0.0876 24 1 -0.1927 -1.5158 1.7350 25 1 -1.0458 -3.8293 2.2617 26 1 2.6180 -5.9717 -0.8314 27 1 4.0719 -5.0720 -3.0795 28 1 5.1853 -5.1719 -1.6944 29 1 3.0394 -7.1532 -3.8431 30 1 5.4968 -6.8999 -4.1328 31 1 6.4856 -7.0193 -2.6575 32 1 4.8473 -9.2112 -3.7526 33 1 6.4976 -9.0761 -3.9056 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522027885.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -106.580979 kcal Electronic energy + Delta-G solvation = -18125.486293 eV Core-core repulsion = 15082.510208 eV Total energy + Delta-G solvation = -3042.976085 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43492 -39.04713 -38.13505 -35.11103 -34.88460 -34.71766 -31.25543 -30.25298 -27.75582 -25.50851 -24.09605 -22.72879 -21.83084 -20.90042 -19.64293 -18.20190 -17.71157 -17.31460 -16.90936 -16.47063 -16.07547 -15.73640 -15.59314 -15.30922 -14.99512 -14.82633 -14.15323 -14.03626 -13.82601 -13.59640 -13.27545 -13.02765 -12.75730 -12.52452 -12.08012 -12.02187 -11.87593 -11.53983 -11.22678 -10.97759 -10.48429 -10.03641 -9.67940 -9.65371 -9.24513 -9.14493 -6.56013 0.17044 1.19498 1.38619 1.47038 1.65400 1.79453 1.88701 2.25302 2.41428 2.48387 3.13878 3.33119 3.47467 3.95977 3.99078 4.07320 4.19629 4.39954 4.48524 4.66202 4.74619 4.93527 5.02603 5.17116 5.32636 5.35882 5.62504 5.85279 5.91497 6.15277 6.47673 6.56288 6.60382 6.68144 6.87914 7.64716 7.81844 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.005071 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.361745 B = 5520.365206 C = 6539.689617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.002 3.998 3 Si 1.120 2.880 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.268 1.268 7 C -0.466 4.466 8 H 0.081 0.919 9 C 0.089 3.911 10 C -0.172 4.172 11 C -0.168 4.168 12 S 0.027 5.973 13 C -0.473 4.473 14 C 0.588 3.412 15 O -0.605 6.605 16 N -0.731 5.731 17 C 0.097 3.903 18 C 0.113 3.887 19 H 0.103 0.897 20 O -0.565 6.565 21 C 0.040 3.960 22 N -0.853 5.853 23 H 0.290 0.710 24 H 0.129 0.871 25 H 0.185 0.815 26 H 0.400 0.600 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.386 0.614 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.350 0.650 33 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 -9.968 -3.745 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.193 1.193 7 C -0.497 4.497 8 H 0.099 0.901 9 C 0.078 3.922 10 C -0.206 4.206 11 C -0.303 4.303 12 S 0.284 5.716 13 C -0.592 4.592 14 C 0.385 3.615 15 O -0.491 6.491 16 N -0.384 5.384 17 C -0.028 4.028 18 C 0.053 3.947 19 H 0.121 0.879 20 O -0.372 6.372 21 C -0.092 4.092 22 N -0.385 5.385 23 H 0.103 0.897 24 H 0.147 0.853 25 H 0.202 0.798 26 H 0.235 0.765 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.235 0.765 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.163 0.837 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.870 -9.709 -2.738 11.202 hybrid contribution -0.148 0.086 -1.337 1.348 sum 4.722 -9.623 -4.075 11.468 Atomic orbital electron populations 1.70532 1.08572 1.33756 1.28139 1.28771 0.95788 1.07517 0.89644 0.82973 0.74862 0.69481 0.79144 1.18130 1.18233 1.19331 1.20961 1.01403 0.93202 1.34091 0.90070 1.18373 0.90671 0.92841 0.90341 1.21463 0.99344 0.98087 1.01661 1.25506 1.04406 0.95665 1.04720 1.82479 1.29263 1.10283 1.49596 1.23003 1.15690 0.96184 1.24304 1.17026 0.82552 0.82137 0.79793 1.90616 1.53934 1.46727 1.57827 1.45534 1.35604 1.06804 1.50414 1.21945 0.90100 0.97022 0.93745 1.22045 0.85275 0.89942 0.97444 0.87917 1.86582 1.44898 1.69109 1.36565 1.22257 0.98144 0.89873 0.98907 1.58553 1.09587 1.10896 1.59460 0.89663 0.85289 0.79827 0.76531 0.92389 0.91855 0.76537 0.93691 0.89539 0.83679 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.57 12.48 21.89 0.27 -40.30 16 2 C 0.00 0.12 5.23 85.37 0.45 0.56 16 3 Si 1.12 43.55 29.98 68.60 2.06 45.61 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.47 -26.41 8.43 23.34 0.20 -26.22 16 8 H 0.08 4.95 6.15 -2.91 -0.02 4.93 16 9 C 0.09 4.84 5.41 -20.89 -0.11 4.72 16 10 C -0.17 -8.19 8.19 22.60 0.19 -8.01 16 11 C -0.17 -6.79 11.07 66.64 0.74 -6.05 16 12 S 0.03 1.11 22.25 -56.49 -1.26 -0.15 16 13 C -0.47 -24.41 6.51 24.67 0.16 -24.25 16 14 C 0.59 29.84 7.76 86.32 0.67 30.51 16 15 O -0.60 -34.77 14.47 -4.51 -0.07 -34.83 16 16 N -0.73 -28.57 5.50 -467.48 -2.57 -31.14 16 17 C 0.10 2.97 5.31 86.38 0.46 3.43 16 18 C 0.11 2.58 3.27 30.60 0.10 2.68 16 19 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 20 O -0.56 -12.82 12.62 -148.98 -1.88 -14.70 16 21 C 0.04 0.70 6.49 86.30 0.56 1.26 16 22 N -0.85 -13.62 9.62 -186.71 -1.80 -15.41 16 23 H 0.29 15.31 6.22 -92.71 -0.58 14.73 16 24 H 0.13 6.09 6.77 -2.91 -0.02 6.07 16 25 H 0.18 5.74 8.06 -2.91 -0.02 5.72 16 26 H 0.40 14.54 7.55 -92.71 -0.70 13.84 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.39 6.47 9.05 -74.06 -0.67 5.80 16 30 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.35 5.32 8.39 -89.69 -0.75 4.57 16 33 H 0.35 4.17 9.08 -89.70 -0.81 3.36 16 Total: -1.00 -68.27 297.89 -3.39 -71.65 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -1.55 Total: 40.62 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 3.40 Total: -21.35 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -4.09 Total: -86.85 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -1.95 Total: -49.54 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.06 Total: 45.61 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -1.26 Total: -0.15 kcal Total: -68.27 -3.39 -71.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522027885.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.929 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds