Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 O 1.42900 * 109.46843 * 180.02562 * 16 14 12 18 18 C 1.35952 * 116.99994 * 179.97438 * 17 16 14 19 19 C 1.38270 * 121.64192 * 179.73481 * 18 17 16 20 20 C 1.35057 * 114.72621 * 179.80809 * 19 18 17 21 21 S 1.72033 * 105.59831 * 0.41431 * 20 19 18 22 22 N 1.30345 * 121.64147 * 0.02562 * 18 17 16 23 23 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 24 24 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 25 25 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 26 26 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 27 27 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 28 28 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 29 29 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 30 30 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 31 31 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 32 32 H 1.07995 * 122.63472 * 0.02562 * 19 18 17 33 33 H 1.07996 * 127.20405 * 180.18264 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 8 4.0886 0.1525 4.0921 18 6 4.6209 -0.3341 5.2445 19 6 5.4082 0.4499 6.0676 20 6 5.8603 -0.1729 7.1774 21 16 5.2417 -1.7760 7.0927 22 7 4.4189 -1.5643 5.6251 23 1 -0.3633 -1.0222 0.1053 24 1 -0.3633 0.6023 0.8326 25 1 -0.3634 0.4199 -0.9379 26 1 2.2553 -1.8357 -3.4698 27 1 2.4157 -2.7377 0.9717 28 1 1.6237 -2.2852 2.5002 29 1 0.6904 -2.3002 0.9847 30 1 2.4470 -1.0880 3.9073 31 1 3.9004 -1.6025 3.0178 32 1 5.6403 1.4803 5.8425 33 1 6.4833 0.2463 7.9536 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543048405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = -16.732676 kcal Electronic energy + Delta-G solvation = -18286.867664 eV Core-core repulsion = 15247.787693 eV Total energy + Delta-G solvation = -3039.079970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40856 -39.10257 -36.72506 -35.47043 -32.92279 -31.37680 -30.67570 -28.25712 -26.35950 -24.81860 -24.34473 -21.18976 -20.70519 -18.77811 -18.17352 -17.70248 -17.55084 -16.57345 -16.29192 -15.54938 -14.85969 -14.51894 -14.23569 -13.70847 -13.45620 -13.15927 -12.79025 -12.58677 -12.51928 -12.13411 -11.70267 -11.55290 -11.45887 -11.39452 -11.06593 -10.90655 -10.49668 -10.00226 -9.97775 -9.77558 -9.24283 -9.08064 -8.50325 -8.36517 -7.86914 -6.52259 -4.16992 0.47747 1.19467 1.51537 2.29607 2.73367 3.07427 3.36545 3.47912 3.60530 3.87750 4.43605 4.52012 4.79929 4.98158 5.09265 5.19816 5.22234 5.26624 5.49150 5.55070 5.88104 6.02886 6.12472 6.32832 6.37918 6.54647 6.90471 6.91384 7.11383 7.35039 7.77727 8.17477 8.29834 8.65950 8.86084 9.51602 10.85887 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040784 B = 0.003943 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.380120 B = 7099.620308 C = 7361.583811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.612 4.612 5 H 0.061 0.939 6 C 0.037 3.963 7 N -0.900 5.900 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.582 5.582 13 C 0.083 3.917 14 C 0.507 3.493 15 O -0.533 6.533 16 C 0.053 3.947 17 O -0.265 6.265 18 C 0.315 3.685 19 C -0.198 4.198 20 C -0.186 4.186 21 S 0.274 5.726 22 N -0.530 5.530 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.268 0.732 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -1.708 21.414 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.650 4.650 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.534 5.534 8 Si 0.868 3.132 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.315 5.315 13 C -0.060 4.060 14 C 0.292 3.708 15 O -0.410 6.410 16 C -0.026 4.026 17 O -0.169 6.169 18 C 0.100 3.900 19 C -0.234 4.234 20 C -0.333 4.333 21 S 0.421 5.579 22 N -0.371 5.371 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.184 0.816 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.539 -1.724 20.321 20.699 hybrid contribution 0.830 0.169 0.641 1.062 sum 4.369 -1.555 20.962 21.469 Atomic orbital electron populations 1.22526 0.98453 1.00434 1.00580 1.19257 0.90518 0.94787 0.82058 0.92585 1.22157 1.41319 1.10562 0.90960 0.92094 1.25689 0.94506 1.04957 0.91785 1.70875 1.41208 1.10016 1.31258 0.84120 0.77505 0.75382 0.76231 1.20879 1.19902 1.20385 1.47892 1.48818 1.11927 1.22814 1.21658 1.02239 0.82602 0.99542 1.19816 0.79966 0.87249 0.83805 1.90689 1.57399 1.16644 1.76312 1.22567 0.95681 0.92406 0.91926 1.86396 1.63419 1.37809 1.29318 1.20389 0.92641 0.88437 0.88488 1.20426 1.03557 1.04249 0.95174 1.26483 1.04226 1.00931 1.01665 1.83926 1.43775 1.10605 1.19565 1.76602 1.29362 1.18561 1.12610 0.93257 0.95383 0.91377 0.92203 0.92736 0.92658 0.90334 0.88924 0.88808 0.81552 0.79212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.96 37.16 0.33 -3.16 16 2 C 0.24 5.74 2.22 -69.08 -0.15 5.58 16 3 H 0.06 1.50 5.56 -51.93 -0.29 1.21 16 4 C -0.61 -16.93 8.68 -34.44 -0.30 -17.23 16 5 H 0.06 1.79 7.75 -52.48 -0.41 1.39 16 6 C 0.04 1.05 5.30 -17.82 -0.09 0.95 16 7 N -0.90 -27.16 13.70 55.43 0.76 -26.40 16 8 Si 1.04 25.39 26.29 -169.99 -4.47 20.92 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.27 -6.08 5.74 56.52 0.32 -5.76 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.58 -12.27 2.75 -175.26 -0.48 -12.75 16 13 C 0.08 1.38 9.43 59.85 0.56 1.95 16 14 C 0.51 10.61 7.75 -10.99 -0.09 10.53 16 15 O -0.53 -13.28 15.83 -14.35 -0.23 -13.50 16 16 C 0.05 0.87 4.43 36.00 0.16 1.03 16 17 O -0.27 -4.51 9.71 -39.50 -0.38 -4.89 16 18 C 0.31 4.41 7.42 -18.17 -0.13 4.27 16 19 C -0.20 -2.13 10.20 -40.70 -0.42 -2.54 16 20 C -0.19 -1.45 11.41 29.60 0.34 -1.12 16 21 S 0.27 2.55 23.71 -107.50 -2.55 0.00 16 22 N -0.53 -7.13 11.14 28.92 0.32 -6.81 16 23 H 0.05 0.99 6.45 -51.93 -0.33 0.65 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.53 4.85 -51.93 -0.25 1.27 16 26 H 0.27 8.02 8.73 -40.82 -0.36 7.67 16 27 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 28 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 29 H 0.08 1.29 6.33 -51.93 -0.33 0.96 16 30 H 0.09 1.32 7.40 -51.93 -0.38 0.93 16 31 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 32 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -33.74 292.79 -6.07 -39.81 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.67 Total: -1.06 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 0.21 Total: 0.26 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.60 Total: -45.96 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.61 Total: -18.39 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.47 Total: 20.92 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.55 Total: 0.00 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.74 -6.07 -39.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543048405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.081 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds