Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 O 1.42900 * 109.46843 * 180.02562 * 16 14 12 18 18 C 1.35952 * 116.99994 * 179.97438 * 17 16 14 19 19 C 1.38270 * 121.64192 * 179.73481 * 18 17 16 20 20 C 1.35057 * 114.72621 * 179.80809 * 19 18 17 21 21 S 1.72033 * 105.59831 * 0.41431 * 20 19 18 22 22 N 1.30345 * 121.64147 * 0.02562 * 18 17 16 23 23 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 24 24 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 25 25 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 26 26 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 27 27 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 28 28 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 29 29 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 30 30 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 31 31 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 32 32 H 1.07995 * 122.63472 * 0.02562 * 19 18 17 33 33 H 1.07996 * 127.20405 * 180.18264 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 8 4.0886 0.1525 4.0921 18 6 4.6209 -0.3341 5.2445 19 6 5.4082 0.4499 6.0676 20 6 5.8603 -0.1729 7.1774 21 16 5.2417 -1.7760 7.0927 22 7 4.4189 -1.5643 5.6251 23 1 -0.3633 -1.0222 0.1053 24 1 -0.3633 0.6023 0.8326 25 1 -0.3634 0.4199 -0.9379 26 1 2.2553 -1.8357 -3.4698 27 1 2.4157 -2.7377 0.9717 28 1 1.6237 -2.2852 2.5002 29 1 0.6904 -2.3002 0.9847 30 1 2.4470 -1.0880 3.9073 31 1 3.9004 -1.6025 3.0178 32 1 5.6403 1.4803 5.8425 33 1 6.4833 0.2463 7.9536 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543048405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = -41.874157 kcal Electronic energy + Delta-G solvation = -18287.957880 eV Core-core repulsion = 15247.787693 eV Total energy + Delta-G solvation = -3040.170187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57936 -40.56658 -37.85886 -37.17323 -34.95154 -32.52182 -32.19061 -29.61813 -27.84605 -26.80215 -25.35018 -22.91313 -21.63228 -20.32272 -19.60530 -19.17294 -18.81610 -17.82175 -17.79087 -17.14983 -16.30439 -15.78573 -15.29249 -15.25667 -14.87038 -14.54148 -14.42599 -14.16118 -13.81452 -13.71693 -13.44530 -13.23478 -13.05674 -12.41502 -12.28709 -12.25079 -11.87831 -11.73844 -11.66081 -11.21564 -10.87766 -10.78285 -10.51314 -9.65794 -9.32412 -8.76339 -6.43923 -0.28363 0.41483 0.71226 1.39522 1.40768 1.45599 1.50695 1.55144 1.69499 2.39777 2.51591 3.00463 3.36979 3.68156 3.90139 3.97372 4.26275 4.36708 4.43959 4.52156 4.55338 4.68389 4.69634 4.78459 4.86341 5.07113 5.11182 5.34529 5.56368 5.74748 5.94540 5.99408 6.48355 6.53123 7.07713 7.32753 8.58476 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.040784 B = 0.003943 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.380120 B = 7099.620308 C = 7361.583811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.233 3.767 3 H 0.032 0.968 4 C -0.608 4.608 5 H 0.032 0.968 6 C -0.008 4.008 7 N -0.929 5.929 8 Si 1.072 2.928 9 H -0.281 1.281 10 H -0.236 1.236 11 H -0.282 1.282 12 N -0.589 5.589 13 C 0.080 3.920 14 C 0.499 3.501 15 O -0.581 6.581 16 C 0.070 3.930 17 O -0.294 6.294 18 C 0.294 3.706 19 C -0.227 4.227 20 C -0.152 4.152 21 S 0.312 5.688 22 N -0.568 5.568 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.256 0.744 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.174 0.826 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 -1.730 24.409 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.130 3.870 3 H 0.050 0.950 4 C -0.647 4.647 5 H 0.050 0.950 6 C -0.208 4.208 7 N -0.564 5.564 8 Si 0.894 3.106 9 H -0.206 1.206 10 H -0.160 1.160 11 H -0.208 1.208 12 N -0.321 5.321 13 C -0.062 4.062 14 C 0.287 3.713 15 O -0.462 6.462 16 C -0.008 4.008 17 O -0.200 6.200 18 C 0.080 3.920 19 C -0.262 4.262 20 C -0.299 4.299 21 S 0.460 5.540 22 N -0.409 5.409 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.192 0.808 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.336 -1.800 23.357 23.663 hybrid contribution 1.033 0.053 -0.114 1.040 sum 4.369 -1.747 23.243 23.715 Atomic orbital electron populations 1.22363 0.95829 1.01868 1.01090 1.19030 0.92427 0.93352 0.82207 0.94999 1.22318 1.40267 1.09399 0.92684 0.94984 1.26873 0.94427 1.07800 0.91729 1.70984 1.43504 1.09764 1.32189 0.83718 0.78885 0.71248 0.76733 1.20632 1.16006 1.20848 1.47938 1.48778 1.13507 1.21848 1.21890 1.02005 0.79918 1.02411 1.20605 0.78987 0.86860 0.84860 1.90652 1.59023 1.18903 1.77637 1.22333 0.96743 0.91505 0.90229 1.86324 1.64117 1.38709 1.30846 1.20734 0.93819 0.89319 0.88114 1.20583 1.04637 1.04887 0.96086 1.27004 1.02339 0.99585 1.00981 1.83801 1.42390 1.10980 1.16833 1.76367 1.30815 1.18618 1.15102 0.91797 0.93149 0.92140 0.93517 0.93313 0.88385 0.90057 0.86419 0.87788 0.80816 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.36 8.96 71.98 0.64 -5.72 16 2 C 0.23 11.32 2.22 44.24 0.10 11.42 16 3 H 0.03 1.72 5.56 -2.39 -0.01 1.71 16 4 C -0.61 -34.30 8.68 25.60 0.22 -34.08 16 5 H 0.03 1.94 7.75 -2.91 -0.02 1.92 16 6 C -0.01 -0.48 5.30 84.65 0.45 -0.03 16 7 N -0.93 -57.37 13.70 21.45 0.29 -57.08 16 8 Si 1.07 51.28 26.29 68.60 1.80 53.08 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.24 -9.85 5.74 99.48 0.57 -9.28 16 11 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 12 N -0.59 -24.53 2.75 -826.80 -2.28 -26.81 16 13 C 0.08 2.53 9.43 127.77 1.20 3.73 16 14 C 0.50 20.89 7.75 87.66 0.68 21.57 16 15 O -0.58 -29.56 15.83 16.02 0.25 -29.30 16 16 C 0.07 2.23 4.43 71.23 0.32 2.55 16 17 O -0.29 -9.93 9.71 -73.97 -0.72 -10.65 16 18 C 0.29 7.90 7.42 84.92 0.63 8.53 16 19 C -0.23 -4.44 10.20 21.54 0.22 -4.22 16 20 C -0.15 -1.82 11.41 67.09 0.77 -1.05 16 21 S 0.31 4.89 23.71 -56.49 -1.34 3.55 16 22 N -0.57 -14.28 11.14 -176.07 -1.96 -16.25 16 23 H 0.06 2.43 6.45 -2.39 -0.02 2.41 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 2.58 4.85 -2.39 -0.01 2.57 16 26 H 0.26 15.88 8.73 -92.71 -0.81 15.08 16 27 H 0.05 1.60 8.09 -2.39 -0.02 1.58 16 28 H 0.10 2.26 6.44 -2.39 -0.02 2.24 16 29 H 0.08 2.53 6.33 -2.39 -0.02 2.51 16 30 H 0.12 3.09 7.40 -2.39 -0.02 3.07 16 31 H 0.10 3.06 8.10 -2.39 -0.02 3.04 16 32 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 33 H 0.24 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -76.21 292.79 2.24 -73.97 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.96 Total: 6.79 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.23 Total: 2.70 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.94 Total: -100.14 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.46 Total: -39.96 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.80 Total: 53.08 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.34 Total: 3.55 kcal Total: -76.21 2.24 -73.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543048405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.096 kcal (2) G-P(sol) polarization free energy of solvation -76.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds