Wall clock time and date at job start Mon Mar 30 2020 01:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46902 * 159.84154 * 3 2 1 5 5 C 1.36742 * 119.99913 * 97.29833 * 4 3 2 6 6 H 1.08008 * 119.99846 * 144.07456 * 5 4 3 7 7 C 1.39105 * 120.00124 * 324.08044 * 5 4 3 8 8 N 1.31326 * 120.00119 * 350.76667 * 7 5 4 9 9 Si 1.86806 * 120.00312 * 170.76409 * 7 5 4 10 10 H 1.48504 * 109.46755 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47194 * 119.99580 * 9 7 5 12 12 H 1.48499 * 109.47298 * 240.00451 * 9 7 5 13 13 C 1.34773 * 120.00313 * 277.29923 * 4 3 2 14 14 O 1.21693 * 119.99699 * 3.38958 * 13 4 3 15 15 C 1.46983 * 120.00271 * 183.39130 * 13 4 3 16 16 C 1.35914 * 125.14283 * 174.96297 * 15 13 4 17 17 C 1.46357 * 106.13253 * 179.86349 * 16 15 13 18 18 N 1.32975 * 133.87596 * 180.12265 * 17 16 15 19 19 C 1.31444 * 121.38083 * 180.29519 * 18 17 16 20 20 C 1.38849 * 121.18363 * 0.02562 * 19 18 17 21 21 C 1.38249 * 119.71550 * 0.02562 * 20 19 18 22 22 C 1.39262 * 118.33968 * 359.97438 * 21 20 19 23 23 O 1.34609 * 133.40746 * 180.02562 * 22 21 20 24 24 H 4.40643 * 5.51567 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47406 * 39.84612 * 3 2 1 26 26 H 1.08997 * 109.47170 * 279.83890 * 3 2 1 27 27 H 0.97001 * 120.00119 * 179.97438 * 8 7 5 28 28 H 1.08007 * 126.93199 * 0.02562 * 16 15 13 29 29 H 1.08003 * 119.40998 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.14371 * 179.97438 * 20 19 18 31 31 H 1.07996 * 120.82634 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2975 -0.4760 5 6 3.5029 2.2605 0.4218 6 1 4.3352 2.9130 0.2021 7 6 2.8068 2.3998 1.6181 8 7 1.6901 1.7357 1.8092 9 14 3.4606 3.5314 2.9529 10 1 4.7254 4.1595 2.4937 11 1 2.4587 4.5894 3.2395 12 1 3.7171 2.7454 4.1864 13 6 3.2184 1.5415 -1.7988 14 8 2.8321 0.7082 -2.5971 15 6 3.7773 2.8139 -2.2771 16 6 4.0012 3.1294 -3.5801 17 6 4.5559 4.4838 -3.5810 18 7 4.9626 5.3125 -4.5381 19 6 5.4373 6.5051 -4.2547 20 6 5.5336 6.9473 -2.9421 21 6 5.1251 6.1235 -1.9097 22 6 4.6247 4.8634 -2.2279 23 8 4.1532 3.8418 -1.4891 24 1 -1.0503 -0.0002 0.0003 25 1 3.0097 -0.7881 -0.6584 26 1 3.0094 -0.1748 1.0125 27 1 1.2049 1.8326 2.6435 28 1 3.8063 2.5073 -4.4412 29 1 5.7591 7.1523 -5.0573 30 1 5.9266 7.9302 -2.7284 31 1 5.1924 6.4491 -0.8822 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585813171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:34 Heat of formation + Delta-G solvation = 80.445790 kcal Electronic energy + Delta-G solvation = -19819.655108 eV Core-core repulsion = 16649.345161 eV Total energy + Delta-G solvation = -3170.309947 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.15063 -38.97736 -38.19028 -35.38024 -32.81549 -32.09292 -31.60332 -31.04777 -29.59102 -26.86172 -25.23414 -23.77962 -22.90970 -21.22756 -19.91879 -18.46980 -17.67257 -17.24421 -16.44257 -16.12162 -15.79999 -15.20320 -14.66911 -14.42429 -14.04110 -13.73209 -13.20452 -13.07104 -12.75532 -12.54590 -12.40147 -12.33380 -12.06800 -11.77104 -11.25326 -10.81254 -10.54590 -10.25086 -9.51526 -9.46534 -9.24756 -8.93390 -8.83678 -8.68248 -8.25099 -7.95580 -6.53282 -4.28738 0.86340 1.38422 2.25659 2.96491 3.02691 3.09491 3.13868 3.65712 3.93118 3.98995 4.06815 4.19581 4.26485 4.75860 4.81653 4.84585 4.99472 5.14789 5.33178 5.57802 5.62030 5.80978 6.00705 6.08500 6.16810 6.44549 6.55450 6.60253 6.63925 7.06906 7.26832 7.40986 7.49545 8.06580 8.12462 8.78062 8.94972 9.07273 9.49286 10.41409 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.007200 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.859556 B = 3887.924211 C = 5101.248508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.107 4.107 3 C 0.243 3.757 4 N -0.409 5.409 5 C -0.346 4.346 6 H 0.113 0.887 7 C 0.047 3.953 8 N -0.837 5.837 9 Si 0.924 3.076 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.521 3.479 14 O -0.575 6.575 15 C 0.066 3.934 16 C -0.166 4.166 17 C 0.072 3.928 18 N -0.451 5.451 19 C 0.092 3.908 20 C -0.163 4.163 21 C -0.058 4.058 22 C -0.005 4.005 23 O -0.142 6.142 24 H 0.198 0.802 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.274 0.726 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 6.727 -2.181 8.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.108 4.108 3 C 0.121 3.879 4 N -0.124 5.124 5 C -0.474 4.474 6 H 0.130 0.870 7 C -0.162 4.162 8 N -0.471 5.471 9 Si 0.749 3.251 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.309 3.691 14 O -0.461 6.461 15 C 0.012 3.988 16 C -0.188 4.188 17 C -0.057 4.057 18 N -0.160 5.160 19 C -0.074 4.074 20 C -0.183 4.183 21 C -0.085 4.085 22 C -0.056 4.056 23 O -0.041 6.041 24 H 0.215 0.785 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.186 0.814 29 H 0.176 0.824 30 H 0.161 0.839 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.119 5.910 -2.898 8.339 hybrid contribution -0.034 1.131 1.638 1.990 sum 5.086 7.041 -1.260 8.777 Atomic orbital electron populations 1.24145 0.95258 1.02853 1.05236 1.22763 0.94052 0.97683 0.96325 1.18108 0.84858 0.84924 0.99968 1.43553 1.52681 1.12497 1.03626 1.19958 1.15595 1.13057 0.98768 0.86982 1.25589 0.94132 0.97139 0.99387 1.69973 1.12505 1.39078 1.25558 0.85907 0.79268 0.79789 0.80115 1.18843 1.20392 1.20242 1.16951 0.84449 0.84160 0.83543 1.90759 1.54553 1.45757 1.55046 1.22516 0.98504 0.88974 0.88764 1.22228 1.06146 0.93529 0.96926 1.20718 1.01031 0.95268 0.88693 1.67008 1.09446 1.03399 1.36140 1.22672 0.96990 0.92137 0.95609 1.21890 1.02473 1.00712 0.93204 1.20454 0.97739 0.89244 1.01060 1.20889 1.01121 0.91878 0.91746 1.84717 1.64593 1.20770 1.33972 0.78516 0.90783 0.88283 0.91458 0.81410 0.82369 0.83939 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.70 19.12 29.55 0.57 -5.14 16 2 C -0.11 -2.55 11.01 -37.12 -0.41 -2.96 16 3 C 0.24 5.61 5.04 -6.83 -0.03 5.57 16 4 N -0.41 -10.08 2.55 -119.33 -0.30 -10.39 16 5 C -0.35 -8.51 8.21 -15.04 -0.12 -8.63 16 6 H 0.11 2.71 5.49 -52.48 -0.29 2.42 16 7 C 0.05 1.13 5.09 -17.45 -0.09 1.04 16 8 N -0.84 -20.93 9.58 55.50 0.53 -20.40 16 9 Si 0.92 18.67 29.56 -169.99 -5.03 13.64 16 10 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 13 C 0.52 12.85 7.52 -12.72 -0.10 12.76 16 14 O -0.57 -15.00 16.54 5.19 0.09 -14.91 16 15 C 0.07 1.47 6.78 -36.87 -0.25 1.22 16 16 C -0.17 -3.39 10.81 -37.15 -0.40 -3.79 16 17 C 0.07 1.39 7.52 -83.18 -0.63 0.76 16 18 N -0.45 -7.81 10.41 -9.87 -0.10 -7.91 16 19 C 0.09 1.21 11.17 -17.49 -0.20 1.01 16 20 C -0.16 -1.93 10.09 -39.35 -0.40 -2.33 16 21 C -0.06 -0.86 10.19 -39.20 -0.40 -1.26 16 22 C -0.01 -0.10 7.42 -38.27 -0.28 -0.38 16 23 O -0.14 -3.07 7.24 3.31 0.02 -3.05 16 24 H 0.20 3.61 7.80 -54.08 -0.42 3.18 16 25 H 0.07 1.59 7.70 -51.93 -0.40 1.19 16 26 H 0.10 2.22 7.32 -51.93 -0.38 1.84 16 27 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.17 3.20 8.06 -52.48 -0.42 2.78 16 29 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -29.89 286.03 -5.54 -35.42 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -2.32 Total: 5.40 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.74 Total: -2.12 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.12 Total: -38.70 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.11 Total: -17.96 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.89 -5.54 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585813171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.870 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds