Wall clock time and date at job start Mon Mar 30 2020 01:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46902 * 159.84154 * 3 2 1 5 5 C 1.36742 * 119.99913 * 97.29833 * 4 3 2 6 6 H 1.08008 * 119.99846 * 144.07456 * 5 4 3 7 7 C 1.39105 * 120.00124 * 324.08044 * 5 4 3 8 8 N 1.31326 * 120.00119 * 350.76667 * 7 5 4 9 9 Si 1.86806 * 120.00312 * 170.76409 * 7 5 4 10 10 H 1.48504 * 109.46755 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47194 * 119.99580 * 9 7 5 12 12 H 1.48499 * 109.47298 * 240.00451 * 9 7 5 13 13 C 1.34773 * 120.00313 * 277.29923 * 4 3 2 14 14 O 1.21693 * 119.99699 * 3.38958 * 13 4 3 15 15 C 1.46983 * 120.00271 * 183.39130 * 13 4 3 16 16 C 1.35914 * 125.14283 * 174.96297 * 15 13 4 17 17 C 1.46357 * 106.13253 * 179.86349 * 16 15 13 18 18 N 1.32975 * 133.87596 * 180.12265 * 17 16 15 19 19 C 1.31444 * 121.38083 * 180.29519 * 18 17 16 20 20 C 1.38849 * 121.18363 * 0.02562 * 19 18 17 21 21 C 1.38249 * 119.71550 * 0.02562 * 20 19 18 22 22 C 1.39262 * 118.33968 * 359.97438 * 21 20 19 23 23 O 1.34609 * 133.40746 * 180.02562 * 22 21 20 24 24 H 4.40643 * 5.51567 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47406 * 39.84612 * 3 2 1 26 26 H 1.08997 * 109.47170 * 279.83890 * 3 2 1 27 27 H 0.97001 * 120.00119 * 179.97438 * 8 7 5 28 28 H 1.08007 * 126.93199 * 0.02562 * 16 15 13 29 29 H 1.08003 * 119.40998 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.14371 * 179.97438 * 20 19 18 31 31 H 1.07996 * 120.82634 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2975 -0.4760 5 6 3.5029 2.2605 0.4218 6 1 4.3352 2.9130 0.2021 7 6 2.8068 2.3998 1.6181 8 7 1.6901 1.7357 1.8092 9 14 3.4606 3.5314 2.9529 10 1 4.7254 4.1595 2.4937 11 1 2.4587 4.5894 3.2395 12 1 3.7171 2.7454 4.1864 13 6 3.2184 1.5415 -1.7988 14 8 2.8321 0.7082 -2.5971 15 6 3.7773 2.8139 -2.2771 16 6 4.0012 3.1294 -3.5801 17 6 4.5559 4.4838 -3.5810 18 7 4.9626 5.3125 -4.5381 19 6 5.4373 6.5051 -4.2547 20 6 5.5336 6.9473 -2.9421 21 6 5.1251 6.1235 -1.9097 22 6 4.6247 4.8634 -2.2279 23 8 4.1532 3.8418 -1.4891 24 1 -1.0503 -0.0002 0.0003 25 1 3.0097 -0.7881 -0.6584 26 1 3.0094 -0.1748 1.0125 27 1 1.2049 1.8326 2.6435 28 1 3.8063 2.5073 -4.4412 29 1 5.7591 7.1523 -5.0573 30 1 5.9266 7.9302 -2.7284 31 1 5.1924 6.4491 -0.8822 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585813171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:34 Heat of formation + Delta-G solvation = 62.166066 kcal Electronic energy + Delta-G solvation = -19820.447777 eV Core-core repulsion = 16649.345161 eV Total energy + Delta-G solvation = -3171.102616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.59885 -40.63782 -39.62788 -37.24031 -34.13698 -33.89128 -33.40222 -32.43395 -31.00748 -28.58492 -27.02741 -25.21169 -24.20597 -22.70133 -21.60626 -20.19629 -19.28239 -18.78519 -18.00579 -17.47011 -17.21969 -16.83951 -16.46590 -16.03675 -15.80284 -15.09307 -14.65516 -14.47067 -14.17534 -14.12417 -13.99125 -13.85454 -13.50669 -13.49441 -12.89316 -12.61632 -12.11200 -11.53362 -11.35801 -11.29167 -10.79546 -10.64447 -10.45142 -10.04447 -9.92863 -9.54863 -8.33832 -6.17550 -0.48890 0.17843 0.77068 1.41806 1.43130 1.50091 1.58776 1.95994 2.23487 2.29103 2.40847 2.73699 2.76496 3.01871 3.29517 3.47519 3.85483 3.90013 3.95985 4.09905 4.32971 4.43167 4.58716 4.67983 4.74509 4.85388 5.04892 5.13352 5.35192 5.43839 5.48051 5.65281 5.96422 6.27702 6.87000 6.92970 7.15411 7.22667 7.64291 8.60961 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.007200 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.859556 B = 3887.924211 C = 5101.248508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.148 4.148 3 C 0.242 3.758 4 N -0.418 5.418 5 C -0.364 4.364 6 H 0.113 0.887 7 C 0.008 3.992 8 N -0.864 5.864 9 Si 0.989 3.011 10 H -0.255 1.255 11 H -0.280 1.280 12 H -0.271 1.271 13 C 0.512 3.488 14 O -0.604 6.604 15 C 0.029 3.971 16 C -0.155 4.155 17 C 0.043 3.957 18 N -0.476 5.476 19 C 0.099 3.901 20 C -0.128 4.128 21 C -0.067 4.067 22 C -0.028 4.028 23 O -0.159 6.159 24 H 0.232 0.768 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.275 0.725 28 H 0.170 0.830 29 H 0.206 0.794 30 H 0.200 0.800 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 10.227 -2.145 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.150 4.150 3 C 0.121 3.879 4 N -0.132 5.132 5 C -0.491 4.491 6 H 0.130 0.870 7 C -0.198 4.198 8 N -0.498 5.498 9 Si 0.812 3.188 10 H -0.179 1.179 11 H -0.206 1.206 12 H -0.196 1.196 13 C 0.301 3.699 14 O -0.493 6.493 15 C -0.024 4.024 16 C -0.177 4.177 17 C -0.085 4.085 18 N -0.186 5.186 19 C -0.067 4.067 20 C -0.147 4.147 21 C -0.093 4.093 22 C -0.078 4.078 23 O -0.059 6.059 24 H 0.249 0.751 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.188 0.812 29 H 0.223 0.777 30 H 0.217 0.783 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.377 9.393 -2.856 11.707 hybrid contribution -0.335 0.280 1.452 1.516 sum 6.042 9.673 -1.404 11.491 Atomic orbital electron populations 1.25033 0.96286 1.01343 1.03773 1.23199 0.94915 0.99138 0.97745 1.18124 0.85046 0.84829 0.99905 1.43732 1.52697 1.13007 1.03772 1.20164 1.16078 1.13626 0.99200 0.87034 1.26395 0.94149 0.98328 1.00924 1.70093 1.13456 1.40227 1.26002 0.84927 0.78775 0.77779 0.77326 1.17895 1.20581 1.19639 1.17282 0.84258 0.84847 0.83467 1.90697 1.55892 1.47023 1.55640 1.22043 1.01676 0.89203 0.89460 1.22397 1.04485 0.94602 0.96247 1.20604 1.03058 0.95192 0.89616 1.67045 1.10605 1.04935 1.36008 1.23647 0.94293 0.90864 0.97919 1.22570 0.98637 1.01899 0.91616 1.21030 0.97187 0.87707 1.03424 1.21486 1.02112 0.92758 0.91486 1.84585 1.65367 1.21343 1.34566 0.75107 0.90235 0.88429 0.91451 0.81243 0.77697 0.78296 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.02 19.12 74.32 1.42 -9.60 16 2 C -0.15 -7.33 11.01 31.13 0.34 -6.99 16 3 C 0.24 11.75 5.04 84.57 0.43 12.18 16 4 N -0.42 -21.62 2.55 -649.66 -1.65 -23.27 16 5 C -0.36 -18.43 8.21 84.14 0.69 -17.74 16 6 H 0.11 5.56 5.49 -2.91 -0.02 5.54 16 7 C 0.01 0.41 5.09 84.98 0.43 0.84 16 8 N -0.86 -43.94 9.58 21.69 0.21 -43.74 16 9 Si 0.99 38.16 29.56 68.60 2.03 40.19 16 10 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 11 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 13 C 0.51 26.74 7.52 86.54 0.65 27.39 16 14 O -0.60 -33.33 16.54 -4.33 -0.07 -33.40 16 15 C 0.03 1.35 6.78 24.02 0.16 1.51 16 16 C -0.15 -6.60 10.81 23.84 0.26 -6.35 16 17 C 0.04 1.64 7.52 41.69 0.31 1.95 16 18 N -0.48 -15.46 10.41 -185.15 -1.93 -17.39 16 19 C 0.10 2.12 11.17 84.90 0.95 3.07 16 20 C -0.13 -2.30 10.09 22.42 0.23 -2.07 16 21 C -0.07 -1.73 10.19 22.52 0.23 -1.50 16 22 C -0.03 -1.03 7.42 23.12 0.17 -0.86 16 23 O -0.16 -7.09 7.24 -11.07 -0.08 -7.17 16 24 H 0.23 8.19 7.80 -4.40 -0.03 8.16 16 25 H 0.08 3.63 7.70 -2.39 -0.02 3.62 16 26 H 0.10 4.62 7.32 -2.39 -0.02 4.60 16 27 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 28 H 0.17 6.85 8.06 -2.91 -0.02 6.82 16 29 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 31 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -68.70 286.03 5.95 -62.76 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.17 Total: 20.19 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 6.27 Total: 1.83 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -3.37 Total: -84.40 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.15 Total: -40.57 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -68.70 5.95 -62.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585813171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.922 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds