Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46898 * 110.99731 * 176.04807 * 12 2 1 14 14 C 1.46902 * 111.00157 * 299.99853 * 12 2 1 15 15 C 1.50694 * 109.47272 * 169.99926 * 14 12 2 16 16 N 1.29393 * 124.70201 * 90.02929 * 15 14 12 17 17 C 1.30918 * 117.46633 * 180.02562 * 16 15 14 18 18 C 1.36761 * 113.93173 * 359.97438 * 17 16 15 19 19 C 1.46496 * 126.17836 * 179.97438 * 18 17 16 20 20 O 1.21612 * 120.00124 * 179.97438 * 19 18 17 21 21 O 1.34879 * 119.99941 * 359.97438 * 19 18 17 22 22 S 1.70920 * 124.70950 * 269.72729 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47074 * 59.99893 * 13 12 2 28 28 H 1.09005 * 109.47151 * 179.97438 * 13 12 2 29 29 H 1.08994 * 109.47439 * 300.00049 * 13 12 2 30 30 H 1.08995 * 109.47447 * 290.00660 * 14 12 2 31 31 H 1.09009 * 109.46407 * 50.00356 * 14 12 2 32 32 H 1.08000 * 123.03463 * 179.97438 * 17 16 15 33 33 H 0.96704 * 117.00083 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8579 -0.8913 3.6158 16 7 2.9530 -0.8343 4.3028 17 6 3.0734 -1.6543 5.3162 18 6 1.9917 -2.4705 5.5010 19 6 1.8420 -3.4841 6.5480 20 8 0.8264 -4.1503 6.6087 21 8 2.8306 -3.6785 7.4447 22 16 0.8080 -2.0784 4.2559 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 3.9186 0.2052 1.1591 28 1 3.8210 -1.3110 2.0862 29 1 3.8030 -1.3530 0.3066 30 1 2.0518 0.9344 2.5281 31 1 0.4722 0.1322 2.3563 32 1 3.9480 -1.6836 5.9491 33 1 2.6860 -4.3582 8.1172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = -33.060549 kcal Electronic energy + Delta-G solvation = -18083.996034 eV Core-core repulsion = 15044.208034 eV Total energy + Delta-G solvation = -3039.788000 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38189 -39.50824 -37.05152 -36.25135 -33.08276 -31.20897 -29.23752 -28.36242 -25.55821 -24.45935 -23.15521 -22.76418 -20.28214 -19.57713 -18.32025 -17.57856 -16.84243 -16.25677 -15.95775 -15.45055 -14.72822 -14.47379 -14.07355 -13.92318 -13.56448 -13.37668 -12.54747 -12.39178 -11.93124 -11.82526 -11.56564 -11.25972 -11.10511 -11.04547 -10.79839 -10.72172 -10.24938 -10.18176 -9.99877 -9.62267 -9.52729 -9.04655 -8.88063 -8.48678 -7.40264 -6.08217 -4.12843 0.08862 1.04839 1.68671 2.16958 2.90596 2.99478 3.26700 3.34987 3.39280 4.09053 4.36851 4.86693 4.94805 5.08101 5.24352 5.25434 5.62466 5.87535 6.01996 6.16414 6.18262 6.37785 6.70047 6.75785 6.92597 7.00768 7.37130 7.52713 7.58367 7.67260 7.75244 8.04002 8.19407 8.43656 8.92824 9.52548 10.98750 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.036996 B = 0.004073 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.666119 B = 6873.210369 C = 6928.128391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.530 5.530 13 C 0.037 3.963 14 C 0.110 3.890 15 C 0.091 3.909 16 N -0.489 5.489 17 C 0.137 3.863 18 C -0.335 4.335 19 C 0.571 3.429 20 O -0.517 6.517 21 O -0.508 6.508 22 S 0.264 5.736 23 H 0.037 0.963 24 H 0.008 0.992 25 H 0.089 0.911 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.186 0.814 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 -4.326 16.132 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.107 3.893 3 H 0.022 0.978 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.112 4.112 14 C -0.021 4.021 15 C -0.182 4.182 16 N -0.204 5.204 17 C -0.026 4.026 18 C -0.457 4.457 19 C 0.414 3.586 20 O -0.407 6.407 21 O -0.320 6.320 22 S 0.523 5.477 23 H 0.056 0.944 24 H 0.027 0.973 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.203 0.797 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.682 -4.511 15.184 15.854 hybrid contribution 1.415 -0.118 0.190 1.433 sum 2.098 -4.629 15.374 16.192 Atomic orbital electron populations 1.21918 0.97559 0.99950 1.00125 1.19331 0.92413 0.92301 0.85229 0.97817 1.21140 1.31214 1.12427 0.89476 0.91676 1.24917 0.95113 0.95049 0.99049 1.69888 1.36829 1.22951 1.23483 0.86441 0.78620 0.79609 0.82760 1.19722 1.20980 1.21102 1.62281 1.10481 1.52012 1.00873 1.22253 0.87736 0.99734 1.01435 1.20918 1.02204 0.93068 0.85923 1.27941 0.92127 0.98491 0.99634 1.66278 1.21998 1.24987 1.07103 1.22663 0.97620 0.88818 0.93465 1.24897 1.03991 1.09853 1.06995 1.19051 0.80125 0.80205 0.79200 1.90959 1.29645 1.47042 1.73058 1.84567 1.45811 1.59442 1.42169 1.84189 1.16783 1.29331 1.17355 0.94359 0.97268 0.89263 0.92928 0.96373 0.93380 0.90431 0.91948 0.88076 0.79684 0.72495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.76 37.16 0.33 -2.80 16 2 C 0.21 5.09 2.06 -68.86 -0.14 4.95 16 3 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 4 C -0.50 -13.27 7.93 -34.44 -0.27 -13.54 16 5 H 0.07 1.73 6.39 -52.49 -0.34 1.39 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.56 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -10.88 4.61 -237.73 -1.10 -11.97 16 13 C 0.04 0.73 9.07 60.06 0.54 1.27 16 14 C 0.11 1.89 5.35 -4.98 -0.03 1.86 16 15 C 0.09 1.41 6.04 -13.31 -0.08 1.33 16 16 N -0.49 -7.41 9.60 -11.26 -0.11 -7.51 16 17 C 0.14 1.75 11.20 -18.48 -0.21 1.54 16 18 C -0.33 -4.41 6.51 -36.79 -0.24 -4.65 16 19 C 0.57 7.02 8.30 34.06 0.28 7.31 16 20 O -0.52 -7.71 17.75 -19.35 -0.34 -8.05 16 21 O -0.51 -4.31 13.23 -40.98 -0.54 -4.85 16 22 S 0.26 3.69 23.00 -107.50 -2.47 1.22 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 25 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.88 6.49 -51.93 -0.34 0.54 16 29 H 0.08 1.62 6.23 -51.93 -0.32 1.29 16 30 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 31 H 0.10 1.63 5.83 -51.92 -0.30 1.33 16 32 H 0.19 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.42 1.51 9.11 45.56 0.42 1.93 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -30.25 296.15 -7.17 -37.42 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -2.77 Total: -1.34 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 0.09 Total: -1.24 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.58 Total: -43.42 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.89 Total: -12.90 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.47 Total: 1.22 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.25 -7.17 -37.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.363 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds