Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46898 * 110.99731 * 176.04807 * 12 2 1 14 14 C 1.46902 * 111.00157 * 299.99853 * 12 2 1 15 15 C 1.50694 * 109.47272 * 169.99926 * 14 12 2 16 16 N 1.29393 * 124.70201 * 90.02929 * 15 14 12 17 17 C 1.30918 * 117.46633 * 180.02562 * 16 15 14 18 18 C 1.36761 * 113.93173 * 359.97438 * 17 16 15 19 19 C 1.46496 * 126.17836 * 179.97438 * 18 17 16 20 20 O 1.21612 * 120.00124 * 179.97438 * 19 18 17 21 21 O 1.34879 * 119.99941 * 359.97438 * 19 18 17 22 22 S 1.70920 * 124.70950 * 269.72729 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47074 * 59.99893 * 13 12 2 28 28 H 1.09005 * 109.47151 * 179.97438 * 13 12 2 29 29 H 1.08994 * 109.47439 * 300.00049 * 13 12 2 30 30 H 1.08995 * 109.47447 * 290.00660 * 14 12 2 31 31 H 1.09009 * 109.46407 * 50.00356 * 14 12 2 32 32 H 1.08000 * 123.03463 * 179.97438 * 17 16 15 33 33 H 0.96704 * 117.00083 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8579 -0.8913 3.6158 16 7 2.9530 -0.8343 4.3028 17 6 3.0734 -1.6543 5.3162 18 6 1.9917 -2.4705 5.5010 19 6 1.8420 -3.4841 6.5480 20 8 0.8264 -4.1503 6.6087 21 8 2.8306 -3.6785 7.4447 22 16 0.8080 -2.0784 4.2559 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 3.9186 0.2052 1.1591 28 1 3.8210 -1.3110 2.0862 29 1 3.8030 -1.3530 0.3066 30 1 2.0518 0.9344 2.5281 31 1 0.4722 0.1322 2.3563 32 1 3.9480 -1.6836 5.9491 33 1 2.6860 -4.3582 8.1172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = -54.802486 kcal Electronic energy + Delta-G solvation = -18084.938836 eV Core-core repulsion = 15044.208034 eV Total energy + Delta-G solvation = -3040.730801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36214 -40.58160 -38.67406 -37.10570 -34.95029 -32.53012 -30.97323 -29.72414 -27.25325 -26.04654 -24.51399 -23.90473 -21.63753 -21.02415 -19.34098 -18.73018 -18.19481 -17.76053 -17.20497 -16.84447 -16.10225 -15.98801 -15.49626 -15.32079 -14.73444 -14.59841 -14.23403 -14.00723 -13.55404 -12.96315 -12.86981 -12.67436 -12.60254 -12.57910 -12.53160 -12.11897 -12.09216 -11.97053 -11.82962 -10.95071 -10.71985 -10.64986 -10.51105 -10.03543 -9.08604 -8.10808 -6.21657 -0.99189 -0.01634 0.59311 1.13916 1.42666 1.45640 1.56236 1.88229 2.14280 2.43662 2.94070 3.18397 3.45054 3.80279 3.95759 4.30086 4.38308 4.48481 4.57373 4.73003 4.88968 5.00077 5.03133 5.10633 5.23284 5.45609 5.49957 5.71788 5.76152 6.23593 6.28712 6.52263 6.60061 6.88515 6.90696 7.47202 8.95271 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.036996 B = 0.004073 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.666119 B = 6873.210369 C = 6928.128391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.217 3.783 3 H -0.027 1.027 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.535 5.535 13 C 0.046 3.954 14 C 0.114 3.886 15 C 0.073 3.927 16 N -0.501 5.501 17 C 0.140 3.860 18 C -0.336 4.336 19 C 0.579 3.421 20 O -0.547 6.547 21 O -0.493 6.493 22 S 0.274 5.726 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.262 0.738 27 H 0.012 0.988 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.217 0.783 33 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -5.341 17.546 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.111 3.889 3 H -0.009 1.009 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.261 5.261 13 C -0.102 4.102 14 C -0.017 4.017 15 C -0.200 4.200 16 N -0.217 5.217 17 C -0.021 4.021 18 C -0.458 4.458 19 C 0.423 3.577 20 O -0.440 6.440 21 O -0.307 6.307 22 S 0.533 5.467 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.233 0.767 33 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 1.323 -5.538 16.637 17.585 hybrid contribution 1.271 0.164 -0.090 1.284 sum 2.594 -5.375 16.547 17.590 Atomic orbital electron populations 1.21733 0.96720 0.99748 1.00292 1.19115 0.93027 0.90569 0.86219 1.00925 1.21412 1.31148 1.12325 0.90786 0.92306 1.25626 0.95353 0.95719 1.01668 1.70002 1.37676 1.24019 1.24036 0.85521 0.78101 0.78595 0.79490 1.19379 1.20652 1.20826 1.62153 1.10801 1.52004 1.01132 1.22145 0.87426 0.99264 1.01400 1.20836 1.02514 0.93191 0.85156 1.27527 0.93179 0.99463 0.99797 1.66275 1.21999 1.25664 1.07738 1.23063 0.98334 0.87794 0.92920 1.25098 1.03680 1.10087 1.06977 1.18873 0.80126 0.79417 0.79269 1.90959 1.30997 1.48112 1.73929 1.84515 1.44024 1.60171 1.41979 1.84148 1.16623 1.28379 1.17535 0.94567 0.94339 0.91864 0.92895 0.96980 0.91737 0.92033 0.92206 0.87289 0.76655 0.69772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.76 71.98 0.63 -5.16 16 2 C 0.22 10.53 2.06 44.17 0.09 10.62 16 3 H -0.03 -1.44 8.14 -2.39 -0.02 -1.46 16 4 C -0.52 -27.60 7.93 25.60 0.20 -27.40 16 5 H 0.06 3.15 6.39 -2.91 -0.02 3.13 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -51.18 11.32 21.45 0.24 -50.94 16 8 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.54 -21.88 4.61 -906.04 -4.18 -26.06 16 13 C 0.05 1.81 9.07 127.69 1.16 2.97 16 14 C 0.11 3.83 5.35 85.55 0.46 4.29 16 15 C 0.07 2.16 6.04 88.47 0.53 2.69 16 16 N -0.50 -14.24 9.60 -189.54 -1.82 -16.06 16 17 C 0.14 3.20 11.20 84.48 0.95 4.14 16 18 C -0.34 -8.06 6.51 24.08 0.16 -7.90 16 19 C 0.58 12.74 8.30 69.97 0.58 13.32 16 20 O -0.55 -15.28 17.75 19.47 0.35 -14.93 16 21 O -0.49 -6.61 13.23 -57.93 -0.77 -7.38 16 22 S 0.27 7.26 23.00 -56.49 -1.30 5.96 16 23 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.04 1.48 6.20 -2.39 -0.01 1.46 16 25 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 26 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 2.30 6.49 -2.38 -0.02 2.28 16 29 H 0.06 2.59 6.23 -2.39 -0.01 2.57 16 30 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 31 H 0.11 3.42 5.83 -2.38 -0.01 3.40 16 32 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.44 1.59 9.11 -74.05 -0.67 0.91 16 Total: -1.00 -64.33 296.15 0.24 -64.09 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 0.48 Total: 1.61 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 5.21 Total: -1.16 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -5.76 Total: -93.06 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.42 Total: -22.31 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 7.26 SS G_CDS: -1.30 Total: 5.96 kcal Total: -64.33 0.24 -64.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.286 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds