Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47195 * 2 1 4 4 C 1.36937 * 119.99926 * 274.55359 * 3 2 1 5 5 H 1.08005 * 120.00021 * 327.87484 * 4 3 2 6 6 C 1.38810 * 119.99989 * 147.87455 * 4 3 2 7 7 N 1.31619 * 120.00292 * 339.92174 * 6 4 3 8 8 Si 1.86803 * 120.00203 * 159.92537 * 6 4 3 9 9 H 1.48492 * 109.47206 * 89.99416 * 8 6 4 10 10 H 1.48493 * 109.47096 * 210.00150 * 8 6 4 11 11 H 1.48507 * 109.46733 * 329.99804 * 8 6 4 12 12 C 1.46499 * 120.00010 * 94.27801 * 3 2 1 13 13 H 1.09008 * 109.47191 * 185.76127 * 12 3 2 14 14 C 1.52998 * 109.47000 * 305.76137 * 12 3 2 15 15 C 1.50694 * 109.47123 * 65.76558 * 12 3 2 16 16 N 1.29401 * 124.70895 * 315.01993 * 15 12 3 17 17 C 1.30905 * 117.47028 * 179.97438 * 16 15 12 18 18 C 1.36763 * 113.93177 * 0.02562 * 17 16 15 19 19 C 1.46508 * 126.17551 * 180.02562 * 18 17 16 20 20 O 1.21615 * 119.99861 * 180.02562 * 19 18 17 21 21 O 1.34878 * 119.99988 * 0.02592 * 19 18 17 22 22 S 1.70931 * 124.70893 * 134.72141 * 15 12 3 23 23 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46983 * 300.00017 * 1 2 3 25 25 H 1.08995 * 109.47056 * 60.00178 * 1 2 3 26 26 H 1.09002 * 109.46957 * 239.99429 * 2 1 3 27 27 H 1.09007 * 109.47331 * 120.00037 * 2 1 3 28 28 H 0.96996 * 120.00596 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47121 * 179.97438 * 14 12 3 30 30 H 1.08996 * 109.47593 * 299.99990 * 14 12 3 31 31 H 1.08994 * 109.47091 * 60.00470 * 14 12 3 32 32 H 1.07999 * 123.03515 * 179.97438 * 17 16 15 33 33 H 0.96697 * 116.99702 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1578 2.0581 -1.1822 5 1 2.4219 1.5234 -2.0827 6 6 1.9597 3.4313 -1.2232 7 7 1.2723 4.0259 -0.2711 8 14 2.6685 4.4358 -2.6297 9 1 1.6779 4.5100 -3.7334 10 1 2.9802 5.8065 -2.1511 11 1 3.9112 3.7890 -3.1226 12 6 2.3517 2.0402 1.2652 13 1 2.5966 3.0856 1.0768 14 6 1.1535 1.9600 2.2132 15 6 3.5362 1.3521 1.8931 16 7 3.6789 0.0694 1.9867 17 6 4.7676 -0.3768 2.5604 18 6 5.6139 0.6091 2.9871 19 6 6.9006 0.4131 3.6598 20 8 7.5654 1.3754 3.9929 21 8 7.3477 -0.8347 3.9097 22 16 4.8813 2.1575 2.5742 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.1335 4.9854 -0.2999 29 1 1.4018 2.4499 3.1548 30 1 0.2968 2.4577 1.7591 31 1 0.9087 0.9147 2.4016 32 1 4.9780 -1.4286 2.6863 33 1 8.2019 -0.9137 4.3560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -25.452926 kcal Electronic energy + Delta-G solvation = -18728.559218 eV Core-core repulsion = 15689.101110 eV Total energy + Delta-G solvation = -3039.458109 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05927 -39.12922 -36.47935 -35.99339 -32.12834 -31.54071 -29.55919 -28.44256 -25.63365 -24.13017 -22.90818 -22.02932 -20.57587 -19.42031 -18.01639 -17.42674 -16.83164 -16.01889 -15.63918 -14.92002 -14.41943 -14.15245 -13.79012 -13.56620 -13.31052 -13.22193 -12.38259 -11.96472 -11.65370 -11.55410 -11.51368 -11.22028 -11.18283 -10.96538 -10.81450 -10.59957 -10.39403 -10.25972 -9.88611 -9.84957 -9.11377 -9.00458 -8.66768 -8.43297 -6.88486 -6.07112 -3.45442 0.51769 1.48449 2.15275 2.54112 3.25826 3.30362 3.34247 3.35293 3.38430 4.33564 4.63774 5.12686 5.25035 5.35388 5.59241 5.62110 6.17006 6.23544 6.29688 6.39683 6.42239 6.53922 6.57755 6.59999 6.86711 7.02616 7.14742 7.24366 7.35130 7.63958 7.88747 8.13057 8.25906 8.95601 9.58145 10.14322 10.99577 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.006408 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.168326 B = 4368.651331 C = 5040.292049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 N -0.556 5.556 4 C -0.256 4.256 5 H 0.069 0.931 6 C 0.011 3.989 7 N -0.884 5.884 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.240 3.760 13 H 0.123 0.877 14 C -0.137 4.137 15 C 0.095 3.905 16 N -0.492 5.492 17 C 0.140 3.860 18 C -0.346 4.346 19 C 0.571 3.429 20 O -0.525 6.525 21 O -0.510 6.510 22 S 0.184 5.816 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.179 0.821 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -6.447 6.886 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 N -0.274 5.274 4 C -0.387 4.387 5 H 0.086 0.914 6 C -0.190 4.190 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.210 1.210 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.128 3.872 13 H 0.141 0.859 14 C -0.198 4.198 15 C -0.180 4.180 16 N -0.206 5.206 17 C -0.023 4.023 18 C -0.468 4.468 19 C 0.415 3.585 20 O -0.416 6.416 21 O -0.322 6.322 22 S 0.445 5.555 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.196 0.804 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.725 -5.167 6.655 9.660 hybrid contribution 1.250 -0.470 -0.371 1.386 sum 5.975 -5.637 6.285 10.343 Atomic orbital electron populations 1.22353 0.99454 0.98540 1.02025 1.21065 0.91756 0.86255 1.00122 1.43881 1.70786 1.10897 1.01840 1.19238 1.41242 0.90471 0.87723 0.91367 1.25148 0.97654 0.98216 0.98025 1.69974 1.37737 1.10208 1.34720 0.86349 0.79453 0.79543 0.81883 1.20961 1.21159 1.20215 1.19471 0.85543 0.97177 0.85014 0.85920 1.22127 0.99645 1.00564 0.97449 1.30705 1.00766 0.92675 0.93876 1.66208 1.21913 1.13443 1.19000 1.22717 0.87446 1.00516 0.91592 1.24611 1.02041 0.99008 1.21183 1.19179 0.83942 0.80335 0.75053 1.90925 1.57907 1.41706 1.51028 1.84583 1.42365 1.31056 1.74208 1.84226 1.14005 1.07154 1.50107 0.95042 0.93116 0.93016 0.94636 0.91166 0.92985 0.94429 0.89986 0.93611 0.80388 0.72974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.98 37.16 0.37 -2.79 16 2 C 0.13 2.77 5.39 -4.05 -0.02 2.75 16 3 N -0.56 -12.90 2.37 -166.98 -0.40 -13.30 16 4 C -0.26 -6.53 9.53 -15.06 -0.14 -6.67 16 5 H 0.07 1.76 7.91 -52.48 -0.41 1.34 16 6 C 0.01 0.27 4.82 -17.43 -0.08 0.18 16 7 N -0.88 -22.84 11.37 55.49 0.63 -22.21 16 8 Si 0.90 20.29 29.60 -169.99 -5.03 15.26 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 C 0.24 5.19 2.33 -69.09 -0.16 5.03 16 13 H 0.12 2.94 5.73 -51.92 -0.30 2.64 16 14 C -0.14 -2.70 7.99 37.16 0.30 -2.41 16 15 C 0.09 1.86 6.22 -13.30 -0.08 1.78 16 16 N -0.49 -9.16 8.13 -11.26 -0.09 -9.25 16 17 C 0.14 2.26 11.20 -18.48 -0.21 2.05 16 18 C -0.35 -5.73 6.51 -36.78 -0.24 -5.97 16 19 C 0.57 8.68 8.30 34.06 0.28 8.97 16 20 O -0.52 -9.28 17.75 -19.35 -0.34 -9.62 16 21 O -0.51 -5.64 13.23 -40.98 -0.54 -6.18 16 22 S 0.18 3.29 23.00 -107.50 -2.47 0.82 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.98 5.90 -51.93 -0.31 0.67 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.07 1.40 5.73 -51.92 -0.30 1.11 16 28 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.77 7.91 -51.93 -0.41 1.36 16 31 H 0.04 0.86 6.57 -51.93 -0.34 0.52 16 32 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.41 2.47 9.11 45.56 0.42 2.88 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -28.50 296.79 -6.66 -35.17 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.90 Total: 1.93 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 0.01 Total: 2.91 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.14 Total: -44.76 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.89 Total: -15.80 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.47 Total: 0.82 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.50 -6.66 -35.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.712 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds