Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47195 * 2 1 4 4 C 1.36937 * 119.99926 * 274.55359 * 3 2 1 5 5 H 1.08005 * 120.00021 * 327.87484 * 4 3 2 6 6 C 1.38810 * 119.99989 * 147.87455 * 4 3 2 7 7 N 1.31619 * 120.00292 * 339.92174 * 6 4 3 8 8 Si 1.86803 * 120.00203 * 159.92537 * 6 4 3 9 9 H 1.48492 * 109.47206 * 89.99416 * 8 6 4 10 10 H 1.48493 * 109.47096 * 210.00150 * 8 6 4 11 11 H 1.48507 * 109.46733 * 329.99804 * 8 6 4 12 12 C 1.46499 * 120.00010 * 94.27801 * 3 2 1 13 13 H 1.09008 * 109.47191 * 185.76127 * 12 3 2 14 14 C 1.52998 * 109.47000 * 305.76137 * 12 3 2 15 15 C 1.50694 * 109.47123 * 65.76558 * 12 3 2 16 16 N 1.29401 * 124.70895 * 315.01993 * 15 12 3 17 17 C 1.30905 * 117.47028 * 179.97438 * 16 15 12 18 18 C 1.36763 * 113.93177 * 0.02562 * 17 16 15 19 19 C 1.46508 * 126.17551 * 180.02562 * 18 17 16 20 20 O 1.21615 * 119.99861 * 180.02562 * 19 18 17 21 21 O 1.34878 * 119.99988 * 0.02592 * 19 18 17 22 22 S 1.70931 * 124.70893 * 134.72141 * 15 12 3 23 23 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46983 * 300.00017 * 1 2 3 25 25 H 1.08995 * 109.47056 * 60.00178 * 1 2 3 26 26 H 1.09002 * 109.46957 * 239.99429 * 2 1 3 27 27 H 1.09007 * 109.47331 * 120.00037 * 2 1 3 28 28 H 0.96996 * 120.00596 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47121 * 179.97438 * 14 12 3 30 30 H 1.08996 * 109.47593 * 299.99990 * 14 12 3 31 31 H 1.08994 * 109.47091 * 60.00470 * 14 12 3 32 32 H 1.07999 * 123.03515 * 179.97438 * 17 16 15 33 33 H 0.96697 * 116.99702 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1578 2.0581 -1.1822 5 1 2.4219 1.5234 -2.0827 6 6 1.9597 3.4313 -1.2232 7 7 1.2723 4.0259 -0.2711 8 14 2.6685 4.4358 -2.6297 9 1 1.6779 4.5100 -3.7334 10 1 2.9802 5.8065 -2.1511 11 1 3.9112 3.7890 -3.1226 12 6 2.3517 2.0402 1.2652 13 1 2.5966 3.0856 1.0768 14 6 1.1535 1.9600 2.2132 15 6 3.5362 1.3521 1.8931 16 7 3.6789 0.0694 1.9867 17 6 4.7676 -0.3768 2.5604 18 6 5.6139 0.6091 2.9871 19 6 6.9006 0.4131 3.6598 20 8 7.5654 1.3754 3.9929 21 8 7.3477 -0.8347 3.9097 22 16 4.8813 2.1575 2.5742 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.1335 4.9854 -0.2999 29 1 1.4018 2.4499 3.1548 30 1 0.2968 2.4577 1.7591 31 1 0.9087 0.9147 2.4016 32 1 4.9780 -1.4286 2.6863 33 1 8.2019 -0.9137 4.3560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -43.253327 kcal Electronic energy + Delta-G solvation = -18729.331102 eV Core-core repulsion = 15689.101110 eV Total energy + Delta-G solvation = -3040.229992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29013 -40.50347 -38.13029 -37.08181 -33.94148 -33.10961 -30.99466 -30.15750 -27.08993 -25.93296 -24.25536 -23.47691 -22.14015 -20.86577 -19.30160 -19.00578 -18.20789 -17.42488 -16.82715 -16.71878 -16.00687 -15.74103 -15.31828 -15.07820 -14.74294 -14.51947 -14.05419 -13.60135 -13.25764 -13.14553 -12.97190 -12.72745 -12.64903 -12.54319 -12.26830 -12.16403 -12.13472 -11.98170 -11.56080 -11.45791 -10.65642 -10.53368 -10.36619 -9.87408 -8.67981 -7.94459 -5.37958 -0.84492 0.10235 0.72461 1.24883 1.46215 1.50531 1.57783 2.00845 2.19458 2.50115 3.15268 3.32859 3.67154 3.99992 4.14903 4.44178 4.57491 4.60751 4.75814 4.88972 4.96585 5.02545 5.06413 5.27780 5.38935 5.46839 5.48887 5.60520 5.66152 5.76216 6.40806 6.68990 6.91410 7.11760 7.79603 8.32025 9.10477 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.006408 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.168326 B = 4368.651331 C = 5040.292049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 N -0.574 5.574 4 C -0.271 4.271 5 H 0.057 0.943 6 C -0.027 4.027 7 N -0.907 5.907 8 Si 0.950 3.050 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.279 1.279 12 C 0.243 3.757 13 H 0.096 0.904 14 C -0.125 4.125 15 C 0.077 3.923 16 N -0.497 5.497 17 C 0.143 3.857 18 C -0.342 4.342 19 C 0.580 3.420 20 O -0.552 6.552 21 O -0.492 6.492 22 S 0.194 5.806 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.256 0.744 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.216 0.784 33 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 -8.060 8.058 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.010 3.990 3 N -0.293 5.293 4 C -0.402 4.402 5 H 0.074 0.926 6 C -0.225 4.225 7 N -0.550 5.550 8 Si 0.778 3.222 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.204 1.204 12 C 0.131 3.869 13 H 0.114 0.886 14 C -0.185 4.185 15 C -0.198 4.198 16 N -0.211 5.211 17 C -0.018 4.018 18 C -0.465 4.465 19 C 0.425 3.575 20 O -0.445 6.445 21 O -0.306 6.306 22 S 0.454 5.546 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.232 0.768 33 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 6.125 -6.824 7.841 12.065 hybrid contribution 0.983 -0.118 -0.549 1.133 sum 7.108 -6.943 7.291 12.325 Atomic orbital electron populations 1.22235 0.98578 1.00002 1.00543 1.21102 0.92437 0.85339 1.00131 1.43950 1.72440 1.11377 1.01571 1.19301 1.41407 0.90894 0.88578 0.92563 1.25636 0.98198 0.98843 0.99817 1.70068 1.39076 1.09917 1.35919 0.85568 0.78578 0.78229 0.79838 1.21050 1.21260 1.20398 1.19197 0.86835 0.95814 0.85009 0.88632 1.21959 0.98154 1.00872 0.97537 1.29977 1.01034 0.93210 0.95618 1.66201 1.23110 1.12927 1.18881 1.23198 0.86253 1.01979 0.90399 1.24857 1.02809 0.98179 1.20652 1.18893 0.83157 0.81109 0.74354 1.90933 1.58501 1.42951 1.52110 1.84519 1.44058 1.28221 1.73833 1.84184 1.12892 1.07767 1.49731 0.92040 0.93542 0.95441 0.95338 0.90204 0.93413 0.92755 0.92342 0.92802 0.76802 0.69975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.88 9.98 71.98 0.72 -5.16 16 2 C 0.13 5.55 5.39 86.38 0.47 6.02 16 3 N -0.57 -26.94 2.37 -682.21 -1.62 -28.56 16 4 C -0.27 -14.14 9.53 84.03 0.80 -13.34 16 5 H 0.06 2.99 7.91 -2.91 -0.02 2.97 16 6 C -0.03 -1.37 4.82 84.86 0.41 -0.97 16 7 N -0.91 -48.13 11.37 21.65 0.25 -47.88 16 8 Si 0.95 42.56 29.60 68.60 2.03 44.59 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.24 10.57 2.33 44.24 0.10 10.67 16 13 H 0.10 4.70 5.73 -2.38 -0.01 4.69 16 14 C -0.12 -4.91 7.99 71.98 0.57 -4.34 16 15 C 0.08 2.93 6.22 88.46 0.55 3.48 16 16 N -0.50 -17.46 8.13 -189.53 -1.54 -19.00 16 17 C 0.14 4.13 11.20 84.48 0.95 5.07 16 18 C -0.34 -10.36 6.51 24.08 0.16 -10.21 16 19 C 0.58 15.71 8.30 69.98 0.58 16.29 16 20 O -0.55 -18.07 17.75 19.46 0.35 -17.73 16 21 O -0.49 -8.66 13.23 -57.92 -0.77 -9.43 16 22 S 0.19 6.68 23.00 -56.49 -1.30 5.38 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.05 1.78 5.90 -2.39 -0.01 1.77 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.03 1.18 8.08 -2.39 -0.02 1.17 16 27 H 0.08 3.09 5.73 -2.38 -0.01 3.08 16 28 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 2.56 7.91 -2.39 -0.02 2.55 16 31 H 0.05 1.98 6.57 -2.39 -0.02 1.97 16 32 H 0.22 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.44 3.21 9.11 -74.06 -0.67 2.53 16 Total: -1.00 -61.41 296.79 3.18 -58.23 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.48 Total: 6.89 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.31 Total: 7.51 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -2.91 Total: -95.44 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.42 Total: -27.16 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.30 Total: 5.38 kcal Total: -61.41 3.18 -58.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.980 kcal (2) G-P(sol) polarization free energy of solvation -61.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds