Wall clock time and date at job start Mon Mar 30 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37809 * 121.55856 * 2 1 4 4 C 1.35143 * 114.75808 * 180.02562 * 3 2 1 5 5 C 1.50707 * 127.24498 * 180.26800 * 4 3 2 6 6 N 1.46505 * 109.47121 * 95.36801 * 5 4 3 7 7 C 1.36938 * 119.99770 * 87.98680 * 6 5 4 8 8 H 1.08002 * 120.00005 * 322.16603 * 7 6 5 9 9 C 1.38813 * 119.99510 * 142.16479 * 7 6 5 10 10 N 1.31623 * 119.99710 * 157.49395 * 9 7 6 11 11 Si 1.86797 * 120.00327 * 337.49264 * 9 7 6 12 12 H 1.48490 * 109.47229 * 95.32798 * 11 9 7 13 13 H 1.48498 * 109.46911 * 215.33034 * 11 9 7 14 14 H 1.48504 * 109.47063 * 335.32298 * 11 9 7 15 15 C 1.46496 * 119.99804 * 267.98852 * 6 5 4 16 16 C 1.52999 * 109.47358 * 90.00364 * 15 6 5 17 17 C 1.50698 * 109.47240 * 180.02562 * 16 15 6 18 18 O 1.20822 * 119.99926 * 359.97438 * 17 16 15 19 19 O 1.34227 * 119.99963 * 180.02562 * 17 16 15 20 20 S 1.72042 * 105.50443 * 359.97438 * 4 3 2 21 21 N 1.30079 * 121.55966 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46882 * 269.97439 * 1 2 3 23 23 H 1.08996 * 109.47147 * 29.97119 * 1 2 3 24 24 H 1.08994 * 109.46811 * 149.96946 * 1 2 3 25 25 H 1.07993 * 122.62302 * 0.03033 * 3 2 1 26 26 H 1.08999 * 109.46758 * 215.36675 * 5 4 3 27 27 H 1.08994 * 109.46855 * 335.36968 * 5 4 3 28 28 H 0.96995 * 120.00313 * 180.02562 * 10 9 7 29 29 H 1.09005 * 109.46767 * 210.00015 * 15 6 5 30 30 H 1.08999 * 109.47069 * 329.99758 * 15 6 5 31 31 H 1.09005 * 109.46897 * 299.99572 * 16 15 6 32 32 H 1.08999 * 109.47525 * 59.99673 * 16 15 6 33 33 H 0.96704 * 117.00357 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5702 1.0143 -0.0005 5 6 4.6180 2.0975 0.0049 6 7 5.0501 2.3520 1.3815 7 6 6.0739 1.6219 1.9237 8 1 6.1674 0.5704 1.6951 9 6 6.9914 2.2332 2.7670 10 7 7.6826 1.5100 3.6224 11 14 7.2453 4.0822 2.6880 12 1 6.4036 4.7419 3.7182 13 1 8.6744 4.3968 2.9405 14 1 6.8599 4.5776 1.3421 15 6 4.3870 3.3875 2.1778 16 6 3.2072 2.7725 2.9333 17 6 2.5247 3.8378 3.7520 18 8 2.9396 4.9724 3.7334 19 8 1.4565 3.5260 4.5025 20 16 3.8305 -0.6864 -0.0003 21 7 2.1878 -1.1084 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8897 -0.5143 25 1 1.7579 2.1464 0.0005 26 1 5.4730 1.7789 -0.5913 27 1 4.1991 3.0101 -0.4190 28 1 8.3235 1.9371 4.2120 29 1 5.0963 3.8071 2.8912 30 1 4.0248 4.1764 1.5186 31 1 2.4979 2.3529 2.2199 32 1 3.5693 1.9835 3.5924 33 1 1.0525 4.2428 5.0107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600190954.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:56 Heat of formation + Delta-G solvation = -34.788891 kcal Electronic energy + Delta-G solvation = -18784.150733 eV Core-core repulsion = 15744.287787 eV Total energy + Delta-G solvation = -3039.862947 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92937 -38.76061 -36.59995 -35.76053 -32.38141 -31.78695 -30.12430 -29.37752 -26.47814 -24.83796 -22.51372 -21.02603 -20.47053 -19.14531 -17.88829 -17.41028 -16.74300 -16.08957 -15.95393 -15.17515 -14.69660 -14.51046 -13.98521 -13.53368 -13.16451 -12.94503 -12.81759 -12.49051 -12.28667 -12.22244 -11.92260 -11.74230 -11.49015 -11.26299 -10.91151 -10.67027 -10.34073 -10.22864 -10.02243 -9.93912 -9.67592 -9.10669 -8.59340 -8.15466 -7.17123 -6.15302 -3.63744 1.18870 2.02572 2.37019 2.53196 2.79981 3.29368 3.38133 3.43118 3.46448 4.40842 4.80116 4.95358 5.17030 5.37062 5.40828 5.47708 5.58547 5.58963 5.62573 5.74338 5.86891 5.95323 6.08960 6.19131 6.31786 6.43530 6.45367 6.60380 6.77822 7.06050 7.83040 8.17076 8.20214 8.75129 9.51199 9.84893 10.98216 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.008434 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.634933 B = 3319.069323 C = 4595.278062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.112 3.888 3 C -0.228 4.228 4 C -0.147 4.147 5 C 0.207 3.793 6 N -0.586 5.586 7 C -0.290 4.290 8 H 0.085 0.915 9 C 0.048 3.952 10 N -0.887 5.887 11 Si 0.872 3.128 12 H -0.280 1.280 13 H -0.299 1.299 14 H -0.266 1.266 15 C 0.147 3.853 16 C -0.135 4.135 17 C 0.479 3.521 18 O -0.523 6.523 19 O -0.522 6.522 20 S 0.269 5.731 21 N -0.489 5.489 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.146 0.854 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.267 0.733 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 1.479 -5.433 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.263 4.263 4 C -0.280 4.280 5 C 0.078 3.922 6 N -0.306 5.306 7 C -0.418 4.418 8 H 0.103 0.897 9 C -0.155 4.155 10 N -0.526 5.526 11 Si 0.702 3.298 12 H -0.207 1.207 13 H -0.226 1.226 14 H -0.191 1.191 15 C 0.021 3.979 16 C -0.175 4.175 17 C 0.322 3.678 18 O -0.412 6.412 19 O -0.334 6.334 20 S 0.423 5.577 21 N -0.312 5.312 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.208 -0.592 -5.543 12.517 hybrid contribution -1.025 3.111 0.686 3.347 sum -12.233 2.519 -4.857 13.401 Atomic orbital electron populations 1.20479 0.87533 1.03119 1.03090 1.21346 0.98434 0.88751 0.98024 1.20976 0.92702 0.99995 1.12617 1.26977 0.99499 1.02540 0.99031 1.19490 0.92754 0.92066 0.87889 1.44125 1.36468 1.42232 1.07812 1.18749 1.02801 0.92869 1.27331 0.89709 1.25414 0.95839 0.97591 0.96611 1.69869 1.26685 1.36201 1.19825 0.87008 0.76352 0.87365 0.79124 1.20725 1.22635 1.19053 1.21154 0.91941 0.90430 0.94344 1.22309 0.99036 0.97124 0.99036 1.24124 0.76941 0.89841 0.76882 1.90682 1.63755 1.23403 1.63339 1.84624 1.44484 1.46250 1.58007 1.84177 1.09018 0.98100 1.66378 1.76526 1.01472 1.26782 1.26389 0.90403 0.90618 0.90896 0.83653 0.90272 0.91507 0.92344 0.91437 0.92944 0.88311 0.87142 0.74219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.27 36.01 0.37 -0.49 16 2 C 0.11 1.65 6.72 -83.49 -0.56 1.09 16 3 C -0.23 -3.36 8.38 -40.84 -0.34 -3.70 16 4 C -0.15 -2.45 6.01 -35.41 -0.21 -2.66 16 5 C 0.21 3.63 6.28 -5.19 -0.03 3.60 16 6 N -0.59 -12.54 2.06 -174.61 -0.36 -12.90 16 7 C -0.29 -7.39 9.91 -15.06 -0.15 -7.54 16 8 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.05 1.31 5.30 -17.43 -0.09 1.22 16 10 N -0.89 -25.72 13.97 55.49 0.78 -24.95 16 11 Si 0.87 21.43 25.07 -169.99 -4.26 17.17 16 12 H -0.28 -6.99 6.66 56.52 0.38 -6.62 16 13 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.15 3.02 3.84 -4.04 -0.02 3.01 16 16 C -0.13 -2.43 6.13 -27.88 -0.17 -2.61 16 17 C 0.48 8.18 8.33 36.00 0.30 8.48 16 18 O -0.52 -10.36 16.74 -18.75 -0.31 -10.67 16 19 O -0.52 -7.08 13.42 -39.25 -0.53 -7.60 16 20 S 0.27 4.68 23.72 -107.50 -2.55 2.13 16 21 N -0.49 -8.36 12.05 32.03 0.39 -7.97 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.15 1.82 8.05 -52.49 -0.42 1.40 16 26 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 27 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.07 1.59 3.27 -51.93 -0.17 1.42 16 30 H 0.05 0.99 7.83 -51.93 -0.41 0.58 16 31 H 0.10 1.61 6.33 -51.93 -0.33 1.29 16 32 H 0.11 2.18 8.14 -51.93 -0.42 1.76 16 33 H 0.40 3.50 9.10 45.56 0.41 3.92 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -31.45 298.50 -6.27 -37.72 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.01 Total: 2.16 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.91 Total: 0.41 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.80 Total: -45.81 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.84 Total: -18.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.26 Total: 17.17 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -2.55 Total: 2.13 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.45 -6.27 -37.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600190954.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.928 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds