Wall clock time and date at job start Mon Mar 30 2020 01:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33633 * 122.74984 * 2 1 4 4 S 1.76203 * 107.92209 * 179.97438 * 3 2 1 5 5 C 1.70973 * 90.28155 * 0.27418 * 4 3 2 6 6 C 1.50709 * 124.91588 * 179.83772 * 5 4 3 7 7 N 1.46500 * 109.47241 * 270.00502 * 6 5 4 8 8 C 1.36942 * 119.99621 * 270.00033 * 7 6 5 9 9 H 1.07992 * 119.99670 * 142.08282 * 8 7 6 10 10 C 1.38813 * 119.99560 * 322.08339 * 8 7 6 11 11 N 1.31621 * 119.99358 * 157.00556 * 10 8 7 12 12 Si 1.86796 * 120.00519 * 337.00136 * 10 8 7 13 13 H 1.48503 * 109.47010 * 95.70297 * 12 10 8 14 14 H 1.48502 * 109.47227 * 215.70243 * 12 10 8 15 15 H 1.48497 * 109.46930 * 335.70351 * 12 10 8 16 16 C 1.46500 * 120.00253 * 89.99716 * 7 6 5 17 17 C 1.52993 * 109.46846 * 89.77209 * 16 7 6 18 18 C 1.50696 * 109.47069 * 180.02562 * 17 16 7 19 19 O 1.20829 * 120.00071 * 359.97438 * 18 17 16 20 20 O 1.34233 * 120.00294 * 180.02562 * 18 17 16 21 21 N 1.29019 * 110.16995 * 359.84167 * 5 4 3 22 22 H 1.09000 * 109.47463 * 269.73255 * 1 2 3 23 23 H 1.09002 * 109.47717 * 149.73294 * 1 2 3 24 24 H 1.09004 * 109.46793 * 29.73510 * 1 2 3 25 25 H 1.07998 * 126.03825 * 0.04126 * 3 2 1 26 26 H 1.08999 * 109.46542 * 30.00596 * 6 5 4 27 27 H 1.09000 * 109.46934 * 150.00129 * 6 5 4 28 28 H 0.97003 * 119.99553 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.46626 * 209.77314 * 16 7 6 30 30 H 1.09004 * 109.46747 * 329.77331 * 16 7 6 31 31 H 1.09003 * 109.47387 * 300.00141 * 17 16 7 32 32 H 1.09001 * 109.47451 * 59.99971 * 17 16 7 33 33 H 0.96701 * 117.00289 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6730 0.0007 5 6 3.5038 -0.9819 -0.0072 6 6 4.4834 -2.1273 -0.0141 7 7 4.7993 -2.4913 -1.3976 8 6 4.0456 -3.4322 -2.0471 9 1 3.8142 -3.3094 -3.0948 10 6 3.5792 -4.5437 -1.3587 11 7 2.5243 -5.1958 -1.7997 12 14 4.4485 -5.1141 0.1931 13 1 3.7609 -4.5489 1.3818 14 1 4.4169 -6.5972 0.2616 15 1 5.8587 -4.6495 0.1696 16 6 5.9214 -1.8487 -2.0862 17 6 7.1976 -2.6578 -1.8466 18 6 8.3520 -1.9965 -2.5543 19 8 8.1723 -0.9823 -3.1860 20 8 9.5797 -2.5347 -2.4839 21 7 2.2199 -1.1084 -0.0065 22 1 -0.3634 -0.0048 1.0276 23 1 -0.3634 -0.8876 -0.5180 24 1 -0.3633 0.8924 -0.5097 25 1 1.8391 2.1307 0.0006 26 1 5.3964 -1.8275 0.5003 27 1 4.0437 -2.9844 0.4958 28 1 2.1981 -5.9723 -1.3184 29 1 5.7144 -1.8047 -3.1554 30 1 6.0540 -0.8380 -1.6998 31 1 7.4045 -2.7019 -0.7773 32 1 7.0649 -3.6684 -2.2328 33 1 10.2884 -2.0744 -2.9539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600659188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:40 Heat of formation + Delta-G solvation = -26.027695 kcal Electronic energy + Delta-G solvation = -18532.078396 eV Core-core repulsion = 15492.595364 eV Total energy + Delta-G solvation = -3039.483033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.96435 -39.23612 -36.55214 -35.80454 -32.20334 -32.02745 -30.25659 -27.61379 -26.82855 -25.09138 -22.73455 -21.58489 -19.98509 -19.01905 -17.88609 -17.54693 -16.66213 -16.24071 -15.80265 -15.39892 -14.59344 -14.49982 -13.85390 -13.51458 -13.31551 -13.01480 -12.81121 -12.48759 -12.21079 -12.15800 -11.90664 -11.71700 -11.32970 -11.23199 -10.87149 -10.76264 -10.33974 -10.27543 -10.19266 -9.74134 -8.96775 -8.81771 -8.61359 -8.18596 -7.16139 -6.10604 -3.55156 1.27023 1.95246 2.31313 2.48052 3.24177 3.27425 3.36933 3.39934 3.45853 4.41387 4.66177 4.89462 5.24275 5.39387 5.46386 5.54289 5.59156 5.67283 5.76824 5.85789 5.92212 6.04282 6.07569 6.31097 6.35958 6.39196 6.61246 6.75107 6.77483 7.85201 8.11897 8.25658 8.48633 8.76936 9.55126 9.87374 11.03635 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.008005 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.500760 B = 3496.758611 C = 4886.554382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.074 3.926 3 C -0.285 4.285 4 S 0.060 5.940 5 C 0.081 3.919 6 C 0.196 3.804 7 N -0.579 5.579 8 C -0.280 4.280 9 H 0.081 0.919 10 C 0.054 3.946 11 N -0.879 5.879 12 Si 0.865 3.135 13 H -0.280 1.280 14 H -0.296 1.296 15 H -0.263 1.263 16 C 0.160 3.840 17 C -0.137 4.137 18 C 0.481 3.519 19 O -0.522 6.522 20 O -0.523 6.523 21 N -0.459 5.459 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.166 0.834 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.266 0.734 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 9.009 4.286 11.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C -0.424 4.424 4 S 0.314 5.686 5 C -0.202 4.202 6 C 0.066 3.934 7 N -0.299 5.299 8 C -0.408 4.408 9 H 0.099 0.901 10 C -0.150 4.150 11 N -0.517 5.517 12 Si 0.694 3.306 13 H -0.208 1.208 14 H -0.223 1.223 15 H -0.188 1.188 16 C 0.033 3.967 17 C -0.177 4.177 18 C 0.324 3.676 19 O -0.411 6.411 20 O -0.335 6.335 21 N -0.173 5.173 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.183 0.817 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.266 8.926 4.307 11.725 hybrid contribution -0.115 -0.031 0.467 0.481 sum 6.151 8.895 4.774 11.821 Atomic orbital electron populations 1.20316 0.87902 1.03093 1.02314 1.20392 0.98078 0.86858 1.00558 1.26501 0.95028 1.03165 1.17690 1.83764 1.08431 1.06313 1.70073 1.28951 0.94859 0.97039 0.99309 1.20267 0.92590 0.91767 0.88782 1.44155 1.30005 1.44570 1.11178 1.18704 1.27673 0.97869 0.96563 0.90109 1.25400 0.95963 0.96104 0.97506 1.69881 1.20481 1.20511 1.40838 0.87104 0.81568 0.77705 0.84231 1.20760 1.22340 1.18774 1.20825 0.83960 0.93417 0.98450 1.22325 0.90922 1.03416 1.01079 1.24059 0.83248 0.82367 0.77944 1.90686 1.84656 1.25111 1.40619 1.84624 1.19814 1.57595 1.71442 1.66145 1.04809 1.30299 1.16042 0.91175 0.90393 0.91339 0.81695 0.91582 0.89499 0.92394 0.91340 0.93022 0.88590 0.86958 0.74126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.31 36.00 0.37 -0.75 16 2 C 0.07 1.36 6.74 -84.23 -0.57 0.79 16 3 C -0.28 -4.60 11.13 29.12 0.32 -4.27 16 4 S 0.06 1.00 23.18 -107.50 -2.49 -1.49 16 5 C 0.08 1.67 6.97 -13.46 -0.09 1.58 16 6 C 0.20 4.12 5.09 -5.19 -0.03 4.10 16 7 N -0.58 -12.95 2.05 -174.61 -0.36 -13.31 16 8 C -0.28 -7.43 9.90 -15.06 -0.15 -7.58 16 9 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 10 C 0.05 1.48 5.29 -17.43 -0.09 1.39 16 11 N -0.88 -25.98 13.97 55.49 0.78 -25.20 16 12 Si 0.87 20.59 25.10 -169.99 -4.27 16.33 16 13 H -0.28 -6.65 6.68 56.52 0.38 -6.28 16 14 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 15 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 16 C 0.16 3.05 4.96 -4.05 -0.02 3.03 16 17 C -0.14 -2.25 6.13 -27.89 -0.17 -2.43 16 18 C 0.48 7.33 8.33 36.00 0.30 7.63 16 19 O -0.52 -9.24 16.74 -18.75 -0.31 -9.56 16 20 O -0.52 -6.38 13.42 -39.27 -0.53 -6.90 16 21 N -0.46 -10.19 10.53 -8.06 -0.08 -10.27 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 25 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 26 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 27 H 0.09 2.02 3.37 -51.93 -0.18 1.85 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.07 1.38 8.00 -51.93 -0.42 0.97 16 30 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 31 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.40 3.00 9.10 45.56 0.41 3.41 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -32.36 302.43 -5.96 -38.33 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.13 Total: 4.03 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.13 Total: 3.48 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.33 Total: -48.78 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.84 Total: -16.46 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.27 Total: 16.33 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.36 -5.96 -38.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600659188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.301 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds