Wall clock time and date at job start Mon Mar 30 2020 01:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33633 * 122.74984 * 2 1 4 4 S 1.76203 * 107.92209 * 179.97438 * 3 2 1 5 5 C 1.70973 * 90.28155 * 0.27418 * 4 3 2 6 6 C 1.50709 * 124.91588 * 179.83772 * 5 4 3 7 7 N 1.46500 * 109.47241 * 270.00502 * 6 5 4 8 8 C 1.36942 * 119.99621 * 270.00033 * 7 6 5 9 9 H 1.07992 * 119.99670 * 142.08282 * 8 7 6 10 10 C 1.38813 * 119.99560 * 322.08339 * 8 7 6 11 11 N 1.31621 * 119.99358 * 157.00556 * 10 8 7 12 12 Si 1.86796 * 120.00519 * 337.00136 * 10 8 7 13 13 H 1.48503 * 109.47010 * 95.70297 * 12 10 8 14 14 H 1.48502 * 109.47227 * 215.70243 * 12 10 8 15 15 H 1.48497 * 109.46930 * 335.70351 * 12 10 8 16 16 C 1.46500 * 120.00253 * 89.99716 * 7 6 5 17 17 C 1.52993 * 109.46846 * 89.77209 * 16 7 6 18 18 C 1.50696 * 109.47069 * 180.02562 * 17 16 7 19 19 O 1.20829 * 120.00071 * 359.97438 * 18 17 16 20 20 O 1.34233 * 120.00294 * 180.02562 * 18 17 16 21 21 N 1.29019 * 110.16995 * 359.84167 * 5 4 3 22 22 H 1.09000 * 109.47463 * 269.73255 * 1 2 3 23 23 H 1.09002 * 109.47717 * 149.73294 * 1 2 3 24 24 H 1.09004 * 109.46793 * 29.73510 * 1 2 3 25 25 H 1.07998 * 126.03825 * 0.04126 * 3 2 1 26 26 H 1.08999 * 109.46542 * 30.00596 * 6 5 4 27 27 H 1.09000 * 109.46934 * 150.00129 * 6 5 4 28 28 H 0.97003 * 119.99553 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.46626 * 209.77314 * 16 7 6 30 30 H 1.09004 * 109.46747 * 329.77331 * 16 7 6 31 31 H 1.09003 * 109.47387 * 300.00141 * 17 16 7 32 32 H 1.09001 * 109.47451 * 59.99971 * 17 16 7 33 33 H 0.96701 * 117.00289 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6730 0.0007 5 6 3.5038 -0.9819 -0.0072 6 6 4.4834 -2.1273 -0.0141 7 7 4.7993 -2.4913 -1.3976 8 6 4.0456 -3.4322 -2.0471 9 1 3.8142 -3.3094 -3.0948 10 6 3.5792 -4.5437 -1.3587 11 7 2.5243 -5.1958 -1.7997 12 14 4.4485 -5.1141 0.1931 13 1 3.7609 -4.5489 1.3818 14 1 4.4169 -6.5972 0.2616 15 1 5.8587 -4.6495 0.1696 16 6 5.9214 -1.8487 -2.0862 17 6 7.1976 -2.6578 -1.8466 18 6 8.3520 -1.9965 -2.5543 19 8 8.1723 -0.9823 -3.1860 20 8 9.5797 -2.5347 -2.4839 21 7 2.2199 -1.1084 -0.0065 22 1 -0.3634 -0.0048 1.0276 23 1 -0.3634 -0.8876 -0.5180 24 1 -0.3633 0.8924 -0.5097 25 1 1.8391 2.1307 0.0006 26 1 5.3964 -1.8275 0.5003 27 1 4.0437 -2.9844 0.4958 28 1 2.1981 -5.9723 -1.3184 29 1 5.7144 -1.8047 -3.1554 30 1 6.0540 -0.8380 -1.6998 31 1 7.4045 -2.7019 -0.7773 32 1 7.0649 -3.6684 -2.2328 33 1 10.2884 -2.0744 -2.9539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600659188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:39 Heat of formation + Delta-G solvation = -49.561185 kcal Electronic energy + Delta-G solvation = -18533.098885 eV Core-core repulsion = 15492.595364 eV Total energy + Delta-G solvation = -3040.503521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16729 -40.67436 -38.14749 -36.99597 -34.08359 -33.48665 -31.76689 -29.08640 -28.25119 -26.77507 -24.27897 -23.04271 -21.43938 -20.44979 -19.31882 -18.97533 -18.23318 -17.52460 -17.32759 -16.91064 -16.10937 -15.97343 -15.37578 -15.10821 -14.84138 -14.51590 -14.07439 -13.96292 -13.88332 -13.38033 -13.27706 -13.16169 -12.91348 -12.56365 -12.46396 -12.18519 -12.05297 -11.84361 -11.62638 -11.54335 -10.69675 -10.38682 -10.22672 -9.53747 -8.99833 -8.19714 -5.63356 -0.12872 0.58624 0.91168 1.28617 1.35657 1.43542 1.54366 1.93193 2.21992 2.44398 3.02131 3.35093 3.42151 4.04595 4.15529 4.20214 4.29521 4.35455 4.44991 4.59942 4.62817 4.74301 4.76613 4.87354 4.96256 5.05731 5.19200 5.44497 5.68014 5.88661 6.16323 6.84274 7.08246 7.09385 7.53672 7.91253 8.99030 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.008005 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.500760 B = 3496.758611 C = 4886.554382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.039 3.961 3 C -0.266 4.266 4 S 0.126 5.874 5 C 0.038 3.962 6 C 0.193 3.807 7 N -0.589 5.589 8 C -0.265 4.265 9 H 0.033 0.967 10 C -0.001 4.001 11 N -0.937 5.937 12 Si 0.929 3.071 13 H -0.282 1.282 14 H -0.306 1.306 15 H -0.226 1.226 16 C 0.163 3.837 17 C -0.133 4.133 18 C 0.495 3.505 19 O -0.550 6.550 20 O -0.513 6.513 21 N -0.506 5.506 22 H 0.086 0.914 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.206 0.794 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 11.394 5.920 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 C -0.405 4.405 4 S 0.380 5.620 5 C -0.243 4.243 6 C 0.064 3.936 7 N -0.310 5.310 8 C -0.394 4.394 9 H 0.051 0.949 10 C -0.200 4.200 11 N -0.579 5.579 12 Si 0.756 3.244 13 H -0.209 1.209 14 H -0.235 1.235 15 H -0.148 1.148 16 C 0.038 3.962 17 C -0.173 4.173 18 C 0.339 3.661 19 O -0.441 6.441 20 O -0.326 6.326 21 N -0.222 5.222 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.118 0.882 25 H 0.223 0.777 26 H 0.123 0.877 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 8.408 11.340 5.943 15.317 hybrid contribution -0.749 -0.541 -0.090 0.928 sum 7.659 10.799 5.853 14.476 Atomic orbital electron populations 1.20392 0.85943 1.03392 1.03496 1.20890 0.99651 0.86722 1.02006 1.27053 0.94702 1.04381 1.14395 1.83388 1.08133 1.02268 1.68234 1.28638 0.94676 0.99585 1.01408 1.20256 0.94230 0.91538 0.87582 1.44093 1.30988 1.44327 1.11587 1.18402 1.27176 0.98915 0.94928 0.94881 1.26022 0.96370 0.96314 1.01274 1.70028 1.22839 1.21670 1.43366 0.86084 0.82202 0.76214 0.79920 1.20941 1.23478 1.14844 1.20750 0.84280 0.94316 0.96897 1.22064 0.90370 1.02261 1.02613 1.23554 0.83877 0.81573 0.77112 1.90691 1.85263 1.26388 1.41797 1.84539 1.19335 1.57343 1.71409 1.66150 1.06158 1.33142 1.16784 0.89516 0.92870 0.88237 0.77670 0.87670 0.92067 0.92812 0.93604 0.91534 0.86433 0.87783 0.71312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 10.31 71.24 0.73 -1.31 16 2 C 0.04 1.38 6.74 41.52 0.28 1.66 16 3 C -0.27 -7.69 11.13 66.77 0.74 -6.94 16 4 S 0.13 3.82 23.18 -56.49 -1.31 2.51 16 5 C 0.04 1.52 6.97 88.52 0.62 2.14 16 6 C 0.19 7.88 5.09 85.64 0.44 8.31 16 7 N -0.59 -26.22 2.05 -706.34 -1.45 -27.67 16 8 C -0.26 -14.63 9.90 84.03 0.83 -13.80 16 9 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 10 C 0.00 -0.08 5.29 84.86 0.45 0.37 16 11 N -0.94 -58.47 13.97 21.65 0.30 -58.17 16 12 Si 0.93 43.27 25.10 68.60 1.72 44.99 16 13 H -0.28 -13.09 6.68 99.48 0.66 -12.42 16 14 H -0.31 -14.62 7.11 99.48 0.71 -13.92 16 15 H -0.23 -9.02 7.11 99.48 0.71 -8.31 16 16 C 0.16 6.07 4.96 86.38 0.43 6.50 16 17 C -0.13 -4.08 6.13 29.84 0.18 -3.89 16 18 C 0.50 13.79 8.33 71.23 0.59 14.39 16 19 O -0.55 -18.39 16.74 21.95 0.37 -18.02 16 20 O -0.51 -10.67 13.42 -51.45 -0.69 -11.37 16 21 N -0.51 -22.49 10.53 -179.40 -1.89 -24.38 16 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.10 2.09 8.12 -2.38 -0.02 2.07 16 25 H 0.21 4.13 8.06 -2.91 -0.02 4.11 16 26 H 0.11 3.35 8.07 -2.39 -0.02 3.33 16 27 H 0.06 2.81 3.37 -2.39 -0.01 2.80 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.05 1.89 8.00 -2.39 -0.02 1.87 16 30 H 0.07 2.26 8.03 -2.38 -0.02 2.24 16 31 H 0.12 3.11 8.14 -2.39 -0.02 3.10 16 32 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.43 4.75 9.10 -74.06 -0.67 4.08 16 Total: -1.00 -74.46 302.43 2.77 -71.68 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.42 Total: 13.00 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.30 Total: 7.42 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.04 Total: -110.22 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.32 Total: -29.39 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.72 Total: 44.99 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.31 Total: 2.51 kcal Total: -74.46 2.77 -71.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600659188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.122 kcal (2) G-P(sol) polarization free energy of solvation -74.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds