Wall clock time and date at job start Mon Mar 30 2020 01:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.76174 * 125.87821 * 2 1 4 4 C 1.76048 * 90.18914 * 180.22783 * 3 2 1 5 5 N 1.38447 * 125.17748 * 179.77518 * 4 3 2 6 6 C 1.46505 * 119.99966 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47114 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47111 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47045 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99881 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99739 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00037 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99640 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46907 * 59.99848 * 13 11 9 15 15 H 1.48504 * 109.46742 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47117 * 299.99670 * 13 11 9 17 17 N 1.29423 * 109.64614 * 359.81176 * 4 3 2 18 18 C 1.33671 * 116.89992 * 0.02562 * 17 4 3 19 19 C 1.47002 * 122.49380 * 180.02562 * 18 17 4 20 20 O 1.21571 * 120.00223 * 180.02562 * 19 18 17 21 21 O 1.34823 * 120.00074 * 0.02562 * 19 18 17 22 22 H 1.08994 * 109.47495 * 270.10513 * 1 2 3 23 23 H 1.08998 * 109.46823 * 30.10748 * 1 2 3 24 24 H 1.09004 * 109.47003 * 150.10584 * 1 2 3 25 25 H 0.97002 * 120.00460 * 0.02562 * 5 4 3 26 26 H 1.08997 * 109.47010 * 300.00089 * 6 5 4 27 27 H 1.08995 * 109.46869 * 60.00201 * 6 5 4 28 28 H 1.08999 * 109.46935 * 300.00353 * 7 6 5 29 29 H 1.09002 * 109.47024 * 59.99687 * 7 6 5 30 30 H 1.08997 * 109.47115 * 300.00209 * 8 7 6 31 31 H 1.09000 * 109.46827 * 59.99863 * 8 7 6 32 32 H 0.96995 * 119.99851 * 180.02562 * 12 11 9 33 33 H 0.96700 * 117.00223 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5395 1.4275 0.0000 4 6 3.9693 0.4004 -0.0070 5 7 5.2773 0.8542 -0.0146 6 6 6.3852 -0.1043 -0.0204 7 6 7.7147 0.6529 -0.0289 8 6 8.8717 -0.3482 -0.0344 9 6 10.1812 0.3976 -0.0421 10 1 10.1876 1.4775 -0.0435 11 6 11.3712 -0.2989 -0.0486 12 7 11.3634 -1.6140 -0.0474 13 14 12.9944 0.6257 -0.0589 14 1 13.0851 1.4799 1.1524 15 1 14.1174 -0.3460 -0.0641 16 1 13.0709 1.4779 -1.2726 17 7 3.6117 -0.8434 -0.0047 18 6 2.2989 -1.0952 0.0016 19 6 1.7569 -2.4616 0.0053 20 8 0.5541 -2.6385 0.0105 21 8 2.5936 -3.5188 0.0029 22 1 -0.3634 0.0019 1.0276 23 1 -0.3633 0.8890 -0.5155 24 1 -0.3633 -0.8910 -0.5122 25 1 5.4602 1.8069 -0.0160 26 1 6.3288 -0.7302 0.8701 27 1 6.3187 -0.7310 -0.9098 28 1 7.7708 1.2785 -0.9197 29 1 7.7814 1.2799 0.8602 30 1 8.8154 -0.9735 0.8566 31 1 8.8051 -0.9755 -0.9233 32 1 12.2005 -2.1039 -0.0516 33 1 2.1906 -4.3977 0.0051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600888535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:35 Heat of formation + Delta-G solvation = -60.689480 kcal Electronic energy + Delta-G solvation = -17403.688013 eV Core-core repulsion = 14362.701933 eV Total energy + Delta-G solvation = -3040.986081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63992 -39.01159 -36.56533 -36.11572 -33.74433 -32.27248 -31.06424 -27.87606 -26.56437 -24.51071 -23.46194 -21.93688 -20.63679 -19.72111 -18.61768 -17.74840 -16.38327 -16.33430 -16.12281 -16.06471 -15.10874 -14.78061 -14.45254 -14.19331 -13.62950 -13.22895 -13.06706 -12.86563 -12.31912 -11.98527 -11.93350 -11.85260 -11.63172 -10.94650 -10.79104 -10.63877 -10.58299 -10.23324 -9.75785 -9.73950 -9.46878 -9.38004 -9.17600 -8.39792 -7.74715 -6.04499 -4.07956 0.45532 0.82390 1.32676 1.85863 2.92843 3.13535 3.29768 3.30317 3.35324 3.37363 4.40247 4.47189 4.73456 5.02809 5.31297 5.38840 5.54601 5.56618 5.65522 5.70605 5.87355 6.08773 6.34152 6.52360 6.52717 6.84628 6.97228 7.09601 7.59523 7.68312 7.71612 7.93633 7.96264 8.34276 8.98344 9.56405 11.06690 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003297 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.777589 B = 8490.786029 C = 9315.504852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.175 4.175 3 S 0.063 5.937 4 C 0.359 3.641 5 N -0.682 5.682 6 C 0.129 3.871 7 C -0.122 4.122 8 C 0.026 3.974 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 N -0.514 5.514 18 C 0.063 3.937 19 C 0.566 3.434 20 O -0.512 6.512 21 O -0.490 6.490 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.414 0.586 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.815 3.584 0.070 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.301 4.301 3 S 0.314 5.686 4 C -0.017 4.017 5 N -0.320 5.320 6 C 0.005 3.995 7 C -0.160 4.160 8 C -0.012 4.012 9 C -0.563 4.563 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.241 5.241 18 C -0.067 4.067 19 C 0.408 3.592 20 O -0.402 6.402 21 O -0.300 6.300 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.119 0.881 25 H 0.251 0.749 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -20.436 4.316 0.070 20.887 hybrid contribution 0.623 -0.521 0.015 0.812 sum -19.814 3.795 0.085 20.174 Atomic orbital electron populations 1.20471 0.85856 1.04169 1.03392 1.25496 1.01210 0.92930 1.10423 1.85012 0.98314 1.09666 1.75588 1.24159 0.90820 0.89729 0.96965 1.44483 0.99688 1.09970 1.77846 1.21811 0.84037 0.91229 1.02422 1.21927 0.93071 0.99997 1.01026 1.19011 0.90698 0.93705 0.97765 1.21155 0.90928 0.92958 1.51259 0.92688 1.25023 0.99300 0.94854 0.95205 1.69950 1.27053 1.05866 1.50329 0.86639 0.83119 0.79524 0.78602 1.20235 1.21245 1.20230 1.66705 1.14453 1.16216 1.26688 1.18574 0.87690 0.91374 1.09033 1.19639 0.83418 0.84431 0.71717 1.90866 1.15805 1.86199 1.47287 1.84766 1.42492 1.17833 1.84862 0.90354 0.91328 0.88127 0.74852 0.91396 0.91398 0.92593 0.92599 0.96177 0.96178 0.92822 0.73076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.64 36.01 0.35 -0.40 16 2 C -0.17 -2.10 6.62 -35.41 -0.23 -2.34 16 3 S 0.06 0.69 23.41 -107.50 -2.52 -1.83 16 4 C 0.36 5.04 8.32 -88.05 -0.73 4.31 16 5 N -0.68 -9.30 5.71 -61.02 -0.35 -9.64 16 6 C 0.13 2.14 5.96 -4.04 -0.02 2.12 16 7 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 8 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 9 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 10 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 13 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 N -0.51 -8.17 10.07 -10.61 -0.11 -8.28 16 18 C 0.06 0.91 6.67 -84.61 -0.56 0.34 16 19 C 0.57 7.55 8.31 34.28 0.28 7.84 16 20 O -0.51 -6.93 14.81 -19.32 -0.29 -7.22 16 21 O -0.49 -5.79 13.34 -40.83 -0.54 -6.33 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.10 1.04 5.97 -51.93 -0.31 0.73 16 25 H 0.41 4.59 8.60 -40.82 -0.35 4.24 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.41 2.53 9.11 45.56 0.42 2.95 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -32.45 306.68 -8.25 -40.70 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.17 Total: 0.75 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.61 Total: -3.24 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.28 Total: -43.67 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.83 Total: -13.55 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.52 Total: -1.83 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.45 -8.25 -40.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600888535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.993 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds