Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.76174 * 125.87821 * 2 1 4 4 C 1.76048 * 90.18914 * 180.22783 * 3 2 1 5 5 N 1.38447 * 125.17748 * 179.77518 * 4 3 2 6 6 C 1.46505 * 119.99966 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47114 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47111 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47045 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99881 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99739 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00037 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99640 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46907 * 59.99848 * 13 11 9 15 15 H 1.48504 * 109.46742 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47117 * 299.99670 * 13 11 9 17 17 N 1.29423 * 109.64614 * 359.81176 * 4 3 2 18 18 C 1.33671 * 116.89992 * 0.02562 * 17 4 3 19 19 C 1.47002 * 122.49380 * 180.02562 * 18 17 4 20 20 O 1.21571 * 120.00223 * 180.02562 * 19 18 17 21 21 O 1.34823 * 120.00074 * 0.02562 * 19 18 17 22 22 H 1.08994 * 109.47495 * 270.10513 * 1 2 3 23 23 H 1.08998 * 109.46823 * 30.10748 * 1 2 3 24 24 H 1.09004 * 109.47003 * 150.10584 * 1 2 3 25 25 H 0.97002 * 120.00460 * 0.02562 * 5 4 3 26 26 H 1.08997 * 109.47010 * 300.00089 * 6 5 4 27 27 H 1.08995 * 109.46869 * 60.00201 * 6 5 4 28 28 H 1.08999 * 109.46935 * 300.00353 * 7 6 5 29 29 H 1.09002 * 109.47024 * 59.99687 * 7 6 5 30 30 H 1.08997 * 109.47115 * 300.00209 * 8 7 6 31 31 H 1.09000 * 109.46827 * 59.99863 * 8 7 6 32 32 H 0.96995 * 119.99851 * 180.02562 * 12 11 9 33 33 H 0.96700 * 117.00223 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5395 1.4275 0.0000 4 6 3.9693 0.4004 -0.0070 5 7 5.2773 0.8542 -0.0146 6 6 6.3852 -0.1043 -0.0204 7 6 7.7147 0.6529 -0.0289 8 6 8.8717 -0.3482 -0.0344 9 6 10.1812 0.3976 -0.0421 10 1 10.1876 1.4775 -0.0435 11 6 11.3712 -0.2989 -0.0486 12 7 11.3634 -1.6140 -0.0474 13 14 12.9944 0.6257 -0.0589 14 1 13.0851 1.4799 1.1524 15 1 14.1174 -0.3460 -0.0641 16 1 13.0709 1.4779 -1.2726 17 7 3.6117 -0.8434 -0.0047 18 6 2.2989 -1.0952 0.0016 19 6 1.7569 -2.4616 0.0053 20 8 0.5541 -2.6385 0.0105 21 8 2.5936 -3.5188 0.0029 22 1 -0.3634 0.0019 1.0276 23 1 -0.3633 0.8890 -0.5155 24 1 -0.3633 -0.8910 -0.5122 25 1 5.4602 1.8069 -0.0160 26 1 6.3288 -0.7302 0.8701 27 1 6.3187 -0.7310 -0.9098 28 1 7.7708 1.2785 -0.9197 29 1 7.7814 1.2799 0.8602 30 1 8.8154 -0.9735 0.8566 31 1 8.8051 -0.9755 -0.9233 32 1 12.2005 -2.1039 -0.0516 33 1 2.1906 -4.3977 0.0051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600888535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = -82.967345 kcal Electronic energy + Delta-G solvation = -17404.654054 eV Core-core repulsion = 14362.701933 eV Total energy + Delta-G solvation = -3041.952121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62156 -40.04398 -37.75441 -37.14996 -35.52525 -33.66871 -32.46462 -29.15771 -28.04040 -25.53936 -25.06904 -23.05368 -22.30602 -20.74221 -19.69085 -18.76770 -18.40385 -17.41349 -17.09719 -17.07730 -16.50258 -16.40731 -15.91383 -15.36326 -14.56295 -14.32812 -14.19726 -13.95049 -13.81792 -13.60742 -13.47807 -12.86952 -12.73754 -12.58931 -12.54305 -12.39520 -11.77675 -11.52293 -11.48778 -11.21372 -11.10314 -10.66668 -10.53668 -10.29276 -8.79590 -8.18563 -6.29965 -0.51443 -0.15740 0.36033 0.82448 1.42422 1.45140 1.52965 2.00002 2.11413 2.31459 2.43501 3.15260 3.43296 3.86281 4.15629 4.18289 4.23958 4.54184 4.58737 4.69860 4.86551 4.96625 5.04693 5.13399 5.17724 5.49921 5.51413 5.72429 5.75005 5.85507 6.07136 6.23838 6.78514 6.87493 7.04224 7.39594 8.93246 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003297 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.777589 B = 8490.786029 C = 9315.504852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.168 4.168 3 S 0.142 5.858 4 C 0.330 3.670 5 N -0.678 5.678 6 C 0.149 3.851 7 C -0.103 4.103 8 C 0.026 3.974 9 C -0.543 4.543 10 H 0.066 0.934 11 C -0.002 4.002 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.266 1.266 15 H -0.286 1.286 16 H -0.266 1.266 17 N -0.548 5.548 18 C 0.027 3.973 19 C 0.566 3.434 20 O -0.520 6.520 21 O -0.500 6.500 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.427 0.573 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.068 0.932 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.791 5.908 0.094 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.294 4.294 3 S 0.394 5.606 4 C -0.044 4.044 5 N -0.319 5.319 6 C 0.023 3.977 7 C -0.141 4.141 8 C -0.012 4.012 9 C -0.581 4.581 10 H 0.084 0.916 11 C -0.200 4.200 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.191 1.191 17 N -0.275 5.275 18 C -0.103 4.103 19 C 0.408 3.592 20 O -0.411 6.411 21 O -0.312 6.312 22 H 0.109 0.891 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.267 0.733 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.072 0.928 33 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -21.449 6.650 0.094 22.456 hybrid contribution 0.788 -1.253 0.008 1.480 sum -20.661 5.398 0.103 21.354 Atomic orbital electron populations 1.20588 0.83937 1.04966 1.04390 1.26068 1.02691 0.93228 1.07416 1.84714 0.94965 1.06955 1.73935 1.24321 0.91682 0.90579 0.97825 1.44089 0.99114 1.09942 1.78733 1.21268 0.84302 0.91140 1.00949 1.21613 0.91800 0.98586 1.02148 1.18911 0.92767 0.94352 0.95168 1.21664 0.92090 0.93742 1.50576 0.91582 1.26002 1.03503 0.95695 0.94793 1.70100 1.28047 1.07697 1.51605 0.85495 0.78068 0.78203 0.79244 1.19066 1.21201 1.19055 1.66652 1.15834 1.17942 1.27059 1.18785 0.87591 0.92438 1.11456 1.19629 0.83352 0.84640 0.71566 1.90850 1.15890 1.86416 1.47991 1.84728 1.42920 1.19039 1.84551 0.89061 0.88797 0.89036 0.73290 0.93001 0.93000 0.91357 0.91368 0.98856 0.98855 0.92813 0.70672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 9.64 71.24 0.69 -0.61 16 2 C -0.17 -3.71 6.62 24.97 0.17 -3.55 16 3 S 0.14 2.73 23.41 -56.49 -1.32 1.40 16 4 C 0.33 8.95 8.32 179.45 1.49 10.44 16 5 N -0.68 -17.85 5.71 -346.96 -1.98 -19.83 16 6 C 0.15 5.01 5.96 86.38 0.51 5.53 16 7 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 8 C 0.03 1.32 4.97 29.85 0.15 1.47 16 9 C -0.54 -29.94 9.11 25.60 0.23 -29.70 16 10 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 11 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 12 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 13 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 17 N -0.55 -17.39 10.07 -187.49 -1.89 -19.28 16 18 C 0.03 0.74 6.67 40.45 0.27 1.01 16 19 C 0.57 15.04 8.31 70.12 0.58 15.63 16 20 O -0.52 -13.84 14.81 19.61 0.29 -13.55 16 21 O -0.50 -11.94 13.34 -57.35 -0.77 -12.71 16 22 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.73 5.97 -2.39 -0.01 1.72 16 25 H 0.43 8.65 8.60 -92.71 -0.80 7.86 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.43 5.30 9.11 -74.06 -0.67 4.62 16 Total: -1.00 -70.69 306.68 1.05 -69.64 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -0.31 Total: 8.39 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 4.72 Total: -3.12 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -3.58 Total: -95.50 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.47 Total: -26.26 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.32 Total: 1.40 kcal Total: -70.69 1.05 -69.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600888535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.329 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds