Wall clock time and date at job start Mon Mar 30 2020 00:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47006 * 239.99667 * 3 2 1 5 5 H 1.48500 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47135 * 120.00144 * 3 2 1 7 7 C 1.37882 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99324 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47274 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47150 * 180.02562 * 11 10 9 13 13 C 1.46902 * 111.00217 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47385 * 179.97438 * 13 12 11 15 15 N 1.29391 * 124.70440 * 89.97398 * 14 13 12 16 16 C 1.30914 * 117.46856 * 180.02562 * 15 14 13 17 17 C 1.36760 * 113.93325 * 0.02562 * 16 15 14 18 18 C 1.46496 * 126.18245 * 179.97438 * 17 16 15 19 19 O 1.21612 * 120.00029 * 359.97438 * 18 17 16 20 20 O 1.34878 * 119.99998 * 179.97438 * 18 17 16 21 21 S 1.70923 * 124.70882 * 270.01982 * 14 13 12 22 22 H 0.96998 * 120.00026 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00584 * 9 7 2 24 24 H 1.08997 * 109.47400 * 300.00104 * 9 7 2 25 25 H 1.09000 * 109.46682 * 60.00517 * 10 9 7 26 26 H 1.09001 * 109.47126 * 300.00806 * 10 9 7 27 27 H 1.08994 * 109.47109 * 59.99729 * 11 10 9 28 28 H 1.09009 * 109.46588 * 300.00204 * 11 10 9 29 29 H 1.00905 * 111.00315 * 56.04632 * 12 11 10 30 30 H 1.08999 * 109.46356 * 59.99753 * 13 12 11 31 31 H 1.09002 * 109.46936 * 300.00279 * 13 12 11 32 32 H 1.08001 * 123.03699 * 179.73614 * 16 15 14 33 33 H 0.96705 * 116.99820 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9872 -0.0025 12 7 2.4348 -6.1037 -0.0031 13 6 1.7346 -7.3950 -0.0031 14 6 2.7441 -8.5139 -0.0044 15 7 3.2387 -9.0610 1.0587 16 6 4.1089 -10.0249 0.8927 17 6 4.3714 -10.3158 -0.4175 18 6 5.2970 -11.3403 -0.9074 19 8 5.9177 -12.0263 -0.1181 20 8 5.4607 -11.5226 -2.2337 21 16 3.3953 -9.2356 -1.4103 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6048 0.8878 26 1 2.8714 -3.6039 -0.8922 27 1 0.8532 -5.0442 -0.8921 28 1 0.8540 -5.0455 0.8878 29 1 3.0698 -6.0371 0.7783 30 1 1.1094 -7.4692 -0.8929 31 1 1.1100 -7.4697 0.8871 32 1 4.5806 -10.5406 1.7161 33 1 6.0825 -12.2102 -2.5089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:38 Heat of formation + Delta-G solvation = -59.427821 kcal Electronic energy + Delta-G solvation = -16894.353700 eV Core-core repulsion = 13853.422329 eV Total energy + Delta-G solvation = -3040.931371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69311 -39.75568 -36.68699 -36.43780 -33.74470 -32.01483 -30.63589 -28.20830 -25.92395 -24.30644 -23.12867 -22.27272 -20.32059 -19.88126 -19.14317 -17.84101 -16.96914 -16.36936 -16.20196 -15.84149 -15.21220 -14.89373 -14.50514 -14.40962 -13.86577 -13.78566 -13.23253 -12.61511 -12.13302 -12.05040 -11.89181 -11.73329 -11.49955 -11.20829 -10.84497 -10.63612 -10.57646 -10.10223 -9.92867 -9.73944 -9.46554 -9.26781 -9.08686 -8.44240 -8.34965 -6.00624 -4.02827 -0.26929 0.81281 1.29061 1.86055 2.53618 2.58436 3.33587 3.37769 3.40527 3.66312 4.35121 4.48071 4.54697 4.68059 5.00105 5.13187 5.33006 5.35315 5.64507 5.68094 5.78903 5.95873 6.22146 6.59098 6.65278 7.05976 7.11291 7.21728 7.38342 7.38832 7.66142 7.80303 7.99263 8.42226 9.04053 9.61279 11.10777 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043300 B = 0.002621 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.502706 B =10681.721605 C =10859.134197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.685 5.685 13 C 0.124 3.876 14 C 0.069 3.931 15 N -0.481 5.481 16 C 0.143 3.857 17 C -0.317 4.317 18 C 0.570 3.430 19 O -0.506 6.506 20 O -0.511 6.511 21 S 0.253 5.747 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.014 0.986 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.346 0.654 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.190 0.810 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 -23.287 -3.477 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.318 5.318 13 C -0.008 4.008 14 C -0.204 4.204 15 N -0.196 5.196 16 C -0.018 4.018 17 C -0.440 4.440 18 C 0.412 3.588 19 O -0.396 6.396 20 O -0.323 6.323 21 S 0.512 5.488 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.164 0.836 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.207 0.793 33 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 5.808 -22.622 -4.463 23.779 hybrid contribution 0.999 -0.029 1.529 1.827 sum 6.807 -22.651 -2.934 23.833 Atomic orbital electron populations 1.69951 1.06060 1.26723 1.50867 1.25027 0.94854 0.99270 0.95327 0.86650 0.79576 0.83092 0.78644 1.20211 1.21304 1.20257 1.21211 0.93038 0.91042 1.50590 0.92705 1.19058 0.93965 0.91269 0.97194 1.21640 0.99280 0.92666 1.00952 1.22201 0.93974 0.90205 1.00492 1.60693 1.20466 1.00072 1.50550 1.20628 0.91392 0.85393 1.03413 1.27694 1.00473 1.00469 0.91731 1.66281 1.11709 1.10184 1.31397 1.22544 0.92373 0.92154 0.94748 1.24956 1.11998 1.08795 0.98271 1.18995 0.78998 0.80501 0.80277 1.90960 1.45916 1.45837 1.56886 1.84603 1.63893 1.59009 1.24826 1.84191 1.31465 1.23894 1.09222 0.92949 0.96500 0.96723 0.93480 0.92401 0.90953 0.95050 0.83567 0.88341 0.91416 0.79322 0.72147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.13 5.41 -26.73 -0.14 -2.27 16 11 C 0.06 0.94 5.69 -3.83 -0.02 0.92 16 12 N -0.69 -9.15 6.49 -115.06 -0.75 -9.89 16 13 C 0.12 1.34 6.26 -4.98 -0.03 1.31 16 14 C 0.07 0.75 6.89 -13.31 -0.09 0.66 16 15 N -0.48 -5.63 10.50 -11.26 -0.12 -5.75 16 16 C 0.14 1.51 11.16 -18.48 -0.21 1.30 16 17 C -0.32 -3.23 6.52 -36.79 -0.24 -3.47 16 18 C 0.57 5.59 8.30 34.06 0.28 5.87 16 19 O -0.51 -6.12 17.66 -19.35 -0.34 -6.47 16 20 O -0.51 -3.53 13.33 -40.98 -0.55 -4.07 16 21 S 0.25 2.38 23.04 -107.50 -2.48 -0.10 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.35 4.65 8.72 -39.29 -0.34 4.31 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.42 0.87 9.11 45.56 0.42 1.29 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -32.79 312.01 -8.09 -40.88 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -3.27 Total: -1.10 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.00 Total: -8.72 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.13 Total: -41.72 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.89 Total: -10.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.48 Total: -0.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.79 -8.09 -40.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.547 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds