Wall clock time and date at job start Mon Mar 30 2020 00:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47006 * 239.99667 * 3 2 1 5 5 H 1.48500 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47135 * 120.00144 * 3 2 1 7 7 C 1.37882 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99324 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47274 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47150 * 180.02562 * 11 10 9 13 13 C 1.46902 * 111.00217 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47385 * 179.97438 * 13 12 11 15 15 N 1.29391 * 124.70440 * 89.97398 * 14 13 12 16 16 C 1.30914 * 117.46856 * 180.02562 * 15 14 13 17 17 C 1.36760 * 113.93325 * 0.02562 * 16 15 14 18 18 C 1.46496 * 126.18245 * 179.97438 * 17 16 15 19 19 O 1.21612 * 120.00029 * 359.97438 * 18 17 16 20 20 O 1.34878 * 119.99998 * 179.97438 * 18 17 16 21 21 S 1.70923 * 124.70882 * 270.01982 * 14 13 12 22 22 H 0.96998 * 120.00026 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00584 * 9 7 2 24 24 H 1.08997 * 109.47400 * 300.00104 * 9 7 2 25 25 H 1.09000 * 109.46682 * 60.00517 * 10 9 7 26 26 H 1.09001 * 109.47126 * 300.00806 * 10 9 7 27 27 H 1.08994 * 109.47109 * 59.99729 * 11 10 9 28 28 H 1.09009 * 109.46588 * 300.00204 * 11 10 9 29 29 H 1.00905 * 111.00315 * 56.04632 * 12 11 10 30 30 H 1.08999 * 109.46356 * 59.99753 * 13 12 11 31 31 H 1.09002 * 109.46936 * 300.00279 * 13 12 11 32 32 H 1.08001 * 123.03699 * 179.73614 * 16 15 14 33 33 H 0.96705 * 116.99820 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9872 -0.0025 12 7 2.4348 -6.1037 -0.0031 13 6 1.7346 -7.3950 -0.0031 14 6 2.7441 -8.5139 -0.0044 15 7 3.2387 -9.0610 1.0587 16 6 4.1089 -10.0249 0.8927 17 6 4.3714 -10.3158 -0.4175 18 6 5.2970 -11.3403 -0.9074 19 8 5.9177 -12.0263 -0.1181 20 8 5.4607 -11.5226 -2.2337 21 16 3.3953 -9.2356 -1.4103 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6048 0.8878 26 1 2.8714 -3.6039 -0.8922 27 1 0.8532 -5.0442 -0.8921 28 1 0.8540 -5.0455 0.8878 29 1 3.0698 -6.0371 0.7783 30 1 1.1094 -7.4692 -0.8929 31 1 1.1100 -7.4697 0.8871 32 1 4.5806 -10.5406 1.7161 33 1 6.0825 -12.2102 -2.5089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:37 Heat of formation + Delta-G solvation = -83.698079 kcal Electronic energy + Delta-G solvation = -16895.406138 eV Core-core repulsion = 13853.422329 eV Total energy + Delta-G solvation = -3041.983808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44772 -40.52746 -37.85449 -37.16049 -35.56457 -33.57615 -31.81709 -29.42903 -27.43396 -25.35885 -24.18263 -23.57952 -21.96479 -20.64581 -19.94913 -18.63059 -18.41403 -17.73966 -17.00097 -16.90991 -16.57144 -16.08495 -15.86335 -15.44288 -14.91443 -14.81447 -14.33408 -14.24151 -13.55688 -13.33688 -13.14757 -12.72766 -12.65039 -12.64422 -12.46363 -12.27889 -12.01030 -11.51428 -11.39082 -11.15921 -10.88406 -10.70332 -10.52676 -10.09632 -9.51603 -8.18580 -6.28991 -1.05805 0.05143 0.51069 1.08029 1.41441 1.44053 1.51986 1.79815 1.91271 2.42343 2.83761 3.14773 3.34357 3.73730 3.93349 4.22597 4.28920 4.36338 4.46168 4.52933 4.75260 4.89842 4.99654 5.10871 5.26687 5.40106 5.53731 5.78133 5.86752 5.90185 6.24414 6.29042 6.45995 6.81346 6.88142 7.40076 8.92971 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043300 B = 0.002621 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.502706 B =10681.721605 C =10859.134197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.073 3.927 12 N -0.685 5.685 13 C 0.125 3.875 14 C 0.053 3.947 15 N -0.499 5.499 16 C 0.135 3.865 17 C -0.327 4.327 18 C 0.576 3.424 19 O -0.534 6.534 20 O -0.504 6.504 21 S 0.296 5.704 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.008 1.008 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.346 0.654 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.200 0.800 33 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 -23.756 -4.224 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.055 4.055 12 N -0.317 5.317 13 C -0.006 4.006 14 C -0.219 4.219 15 N -0.215 5.215 16 C -0.027 4.027 17 C -0.450 4.450 18 C 0.419 3.581 19 O -0.426 6.426 20 O -0.318 6.318 21 S 0.555 5.445 22 H 0.072 0.928 23 H 0.014 0.986 24 H 0.010 0.990 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.164 0.836 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.216 0.784 33 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 6.789 -23.115 -5.239 24.655 hybrid contribution 0.707 0.044 1.694 1.837 sum 7.497 -23.071 -3.545 24.516 Atomic orbital electron populations 1.70078 1.07704 1.27802 1.51733 1.25958 0.95772 1.03265 0.94809 0.85539 0.78314 0.78286 0.79149 1.19189 1.20830 1.19318 1.21692 0.93530 0.92556 1.50457 0.92370 1.18965 0.94418 0.92856 0.95004 1.21381 0.98094 0.92943 1.00786 1.21886 0.93700 0.89167 1.00797 1.60586 1.20037 1.00498 1.50623 1.20675 0.91433 0.84017 1.04507 1.27654 1.00919 1.00858 0.92475 1.66281 1.12232 1.10746 1.32211 1.22724 0.92386 0.92141 0.95424 1.25144 1.12174 1.09094 0.98572 1.18924 0.78392 0.79912 0.80842 1.90952 1.47022 1.46866 1.57768 1.84558 1.64417 1.59822 1.23049 1.83999 1.30189 1.22644 1.07660 0.92776 0.98578 0.98967 0.93421 0.92660 0.90486 0.95032 0.83618 0.86529 0.91141 0.78366 0.69655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.71 5.41 30.60 0.17 -3.54 16 11 C 0.07 2.24 5.69 86.31 0.49 2.74 16 12 N -0.69 -17.29 6.49 -517.94 -3.36 -20.65 16 13 C 0.13 2.50 6.26 85.56 0.54 3.04 16 14 C 0.05 1.07 6.89 88.47 0.61 1.68 16 15 N -0.50 -11.17 10.50 -189.53 -1.99 -13.16 16 16 C 0.13 2.70 11.16 84.48 0.94 3.65 16 17 C -0.33 -6.17 6.52 24.08 0.16 -6.02 16 18 C 0.58 10.43 8.30 69.97 0.58 11.01 16 19 O -0.53 -12.41 17.66 19.47 0.34 -12.06 16 20 O -0.50 -5.83 13.33 -57.92 -0.77 -6.60 16 21 S 0.30 4.96 23.04 -56.49 -1.30 3.66 16 22 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 23 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.35 8.86 8.72 -89.69 -0.78 8.08 16 30 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.44 0.79 9.11 -74.05 -0.67 0.12 16 Total: -1.00 -69.73 312.01 -0.75 -70.49 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -0.31 Total: 4.55 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 4.33 Total: -16.21 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -5.07 Total: -90.00 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.43 Total: -18.66 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.30 Total: 3.66 kcal Total: -69.73 -0.75 -70.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.213 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds