Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 H 1.08010 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00736 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00590 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99710 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47209 * 89.99893 * 11 9 7 13 13 H 1.48500 * 109.47295 * 209.99804 * 11 9 7 14 14 H 1.48503 * 109.47210 * 329.99849 * 11 9 7 15 15 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 16 16 N 1.29397 * 124.70692 * 284.69550 * 15 2 1 17 17 C 1.30916 * 117.46981 * 179.83610 * 16 15 2 18 18 C 1.36759 * 113.92736 * 0.44897 * 17 16 15 19 19 C 1.46502 * 126.17577 * 179.77081 * 18 17 16 20 20 O 1.21609 * 119.99942 * 179.97438 * 19 18 17 21 21 O 1.34878 * 120.00046 * 359.97438 * 19 18 17 22 22 S 1.70921 * 124.70972 * 105.00329 * 15 2 1 23 23 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 25 25 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 26 26 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 27 27 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 28 28 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 29 29 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 30 30 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 31 31 H 0.97002 * 120.00416 * 179.97438 * 10 9 7 32 32 H 1.07998 * 123.03715 * 180.21288 * 17 16 15 33 33 H 0.96696 * 116.99919 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6601 0.4056 4.7515 8 1 2.3643 1.4380 4.6358 9 6 3.0962 -0.0533 5.9762 10 7 3.1524 0.7658 7.0035 11 14 3.6085 -1.8386 6.1762 12 1 5.0592 -1.9725 5.8881 13 1 3.3378 -2.2784 7.5685 14 1 2.8360 -2.6841 5.2309 15 6 2.0323 -0.7104 -1.2304 16 7 2.0234 -1.9937 -1.3954 17 6 2.4927 -2.4606 -2.5249 18 6 2.9431 -1.4935 -3.3805 19 6 3.5231 -1.7147 -4.7075 20 8 3.8882 -0.7675 -5.3771 21 8 3.6523 -2.9689 -5.1865 22 16 2.6996 0.0668 -2.5987 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.4495 -1.4979 1.4100 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6163 2.5525 29 1 1.9202 -1.3567 3.8030 30 1 3.5917 -0.9263 3.3683 31 1 3.4588 0.4428 7.8653 32 1 2.5250 -3.5146 -2.7583 33 1 4.0409 -3.0648 -6.0667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604340292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -51.327644 kcal Electronic energy + Delta-G solvation = -17471.656250 eV Core-core repulsion = 14431.076129 eV Total energy + Delta-G solvation = -3040.580121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55298 -39.71910 -36.95952 -36.39615 -33.46220 -31.79930 -30.35423 -28.40839 -26.51348 -24.14440 -23.43317 -22.32134 -20.57153 -19.95211 -18.52754 -17.77026 -17.01973 -16.72427 -16.09574 -15.42291 -14.96645 -14.62082 -14.39911 -14.17680 -13.99610 -13.62962 -12.93162 -12.75437 -12.51072 -12.13965 -11.95580 -11.83850 -11.51689 -11.34187 -11.25442 -11.06755 -10.30140 -9.99743 -9.82251 -9.75368 -9.68732 -9.26546 -9.14974 -8.55797 -8.10748 -6.06566 -4.05471 -0.11776 0.78975 1.39317 2.01174 2.74725 2.83436 3.32509 3.39559 3.44402 3.87429 4.42396 4.44872 4.69346 4.74090 4.97020 5.07464 5.09710 5.28244 5.50287 5.64576 5.80860 5.99800 6.04666 6.07568 6.19362 6.69299 7.00354 7.33189 7.38677 7.47655 7.53577 7.65889 7.82688 8.49461 8.96833 9.55742 11.06580 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.003534 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.719742 B = 7921.702385 C = 8275.211327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.151 3.849 3 H 0.101 0.899 4 N -0.678 5.678 5 C 0.073 3.927 6 C -0.009 4.009 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.068 3.932 10 N -0.903 5.903 11 Si 0.882 3.118 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.092 3.908 16 N -0.471 5.471 17 C 0.140 3.860 18 C -0.325 4.325 19 C 0.571 3.429 20 O -0.516 6.516 21 O -0.506 6.506 22 S 0.234 5.766 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.349 0.651 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.015 0.985 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.189 0.811 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 -5.298 -23.227 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.037 3.963 3 H 0.119 0.881 4 N -0.310 5.310 5 C -0.055 4.055 6 C -0.047 4.047 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.709 3.291 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.189 1.189 15 C -0.183 4.183 16 N -0.184 5.184 17 C -0.022 4.022 18 C -0.447 4.447 19 C 0.414 3.586 20 O -0.406 6.406 21 O -0.318 6.318 22 S 0.494 5.506 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.168 0.832 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.206 0.794 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.742 -4.097 -22.795 23.322 hybrid contribution -0.225 -1.890 -0.367 1.938 sum -2.967 -5.987 -23.162 24.107 Atomic orbital electron populations 1.22490 0.94570 1.03422 1.03093 1.20201 0.93513 0.96296 0.86300 0.88070 1.60484 1.56841 1.10364 1.03300 1.22067 0.99190 0.94968 0.89240 1.19537 0.96519 0.96276 0.92389 1.21040 1.44518 0.97724 0.92809 0.91048 1.24996 0.94943 0.97619 0.95795 1.69908 1.47644 1.35377 1.01276 0.86745 0.79453 0.85701 0.77184 1.20250 1.21488 1.18913 1.27976 0.97443 0.92753 1.00089 1.66090 1.19397 1.12119 1.20833 1.22767 0.91791 1.01188 0.86425 1.24818 1.20531 0.98602 1.00763 1.19021 0.74622 0.80602 0.84389 1.90964 1.47499 1.42984 1.59190 1.84562 1.77296 1.30185 1.39793 1.84078 1.52614 1.05684 1.08208 0.91343 0.90614 0.92033 0.83183 0.91520 0.95353 0.96669 0.96038 0.92682 0.79416 0.72309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.14 37.16 0.34 -1.53 16 2 C 0.15 1.91 3.08 -68.87 -0.21 1.69 16 3 H 0.10 1.18 7.80 -51.93 -0.40 0.77 16 4 N -0.68 -10.78 6.20 -107.95 -0.67 -11.45 16 5 C 0.07 1.37 5.42 -3.82 -0.02 1.35 16 6 C -0.01 -0.22 4.30 -27.89 -0.12 -0.34 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 11 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 15 C 0.09 1.14 6.24 -13.31 -0.08 1.06 16 16 N -0.47 -6.15 10.45 -11.26 -0.12 -6.27 16 17 C 0.14 1.55 11.20 -18.48 -0.21 1.35 16 18 C -0.32 -3.67 6.51 -36.79 -0.24 -3.91 16 19 C 0.57 6.15 8.30 34.06 0.28 6.43 16 20 O -0.52 -6.90 17.75 -19.35 -0.34 -7.24 16 21 O -0.51 -3.68 13.23 -40.98 -0.54 -4.22 16 22 S 0.23 2.59 23.00 -107.50 -2.47 0.12 16 23 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 24 H 0.07 0.83 7.45 -51.92 -0.39 0.44 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.35 5.48 8.47 -39.29 -0.33 5.14 16 27 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 28 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 29 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.42 1.06 9.11 45.56 0.42 1.47 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -33.49 305.87 -7.26 -40.74 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.13 Total: 0.51 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.69 Total: -7.00 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.01 Total: -44.62 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.89 Total: -11.47 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.47 Total: 0.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.49 -7.26 -40.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604340292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.586 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds