Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 H 1.08010 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00736 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00590 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99710 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47209 * 89.99893 * 11 9 7 13 13 H 1.48500 * 109.47295 * 209.99804 * 11 9 7 14 14 H 1.48503 * 109.47210 * 329.99849 * 11 9 7 15 15 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 16 16 N 1.29397 * 124.70692 * 284.69550 * 15 2 1 17 17 C 1.30916 * 117.46981 * 179.83610 * 16 15 2 18 18 C 1.36759 * 113.92736 * 0.44897 * 17 16 15 19 19 C 1.46502 * 126.17577 * 179.77081 * 18 17 16 20 20 O 1.21609 * 119.99942 * 179.97438 * 19 18 17 21 21 O 1.34878 * 120.00046 * 359.97438 * 19 18 17 22 22 S 1.70921 * 124.70972 * 105.00329 * 15 2 1 23 23 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 25 25 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 26 26 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 27 27 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 28 28 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 29 29 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 30 30 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 31 31 H 0.97002 * 120.00416 * 179.97438 * 10 9 7 32 32 H 1.07998 * 123.03715 * 180.21288 * 17 16 15 33 33 H 0.96696 * 116.99919 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6601 0.4056 4.7515 8 1 2.3643 1.4380 4.6358 9 6 3.0962 -0.0533 5.9762 10 7 3.1524 0.7658 7.0035 11 14 3.6085 -1.8386 6.1762 12 1 5.0592 -1.9725 5.8881 13 1 3.3378 -2.2784 7.5685 14 1 2.8360 -2.6841 5.2309 15 6 2.0323 -0.7104 -1.2304 16 7 2.0234 -1.9937 -1.3954 17 6 2.4927 -2.4606 -2.5249 18 6 2.9431 -1.4935 -3.3805 19 6 3.5231 -1.7147 -4.7075 20 8 3.8882 -0.7675 -5.3771 21 8 3.6523 -2.9689 -5.1865 22 16 2.6996 0.0668 -2.5987 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.4495 -1.4979 1.4100 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6163 2.5525 29 1 1.9202 -1.3567 3.8030 30 1 3.5917 -0.9263 3.3683 31 1 3.4588 0.4428 7.8653 32 1 2.5250 -3.5146 -2.7583 33 1 4.0409 -3.0648 -6.0667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604340292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = -77.061601 kcal Electronic energy + Delta-G solvation = -17472.772158 eV Core-core repulsion = 14431.076129 eV Total energy + Delta-G solvation = -3041.696029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37432 -40.58888 -38.16296 -37.13248 -35.32148 -33.41794 -31.44952 -29.87461 -27.40242 -25.85150 -24.30697 -23.26144 -22.33183 -20.82754 -19.40404 -18.94220 -18.61286 -17.76942 -16.91046 -16.58979 -16.35633 -15.92638 -15.67701 -15.30840 -15.04180 -14.68362 -14.47384 -14.29829 -13.80510 -13.26505 -13.07268 -12.87856 -12.68966 -12.67768 -12.37194 -12.17130 -12.03471 -11.80256 -11.63514 -11.38775 -10.75911 -10.70669 -10.64194 -10.04395 -9.36252 -8.28417 -6.32361 -0.98986 -0.05913 0.52133 1.15967 1.38958 1.39507 1.52100 1.89647 2.12899 2.37766 2.99389 3.07740 3.26709 3.75713 3.91898 4.04415 4.18786 4.36058 4.47500 4.54744 4.67521 4.82754 4.97854 4.99410 5.19453 5.30973 5.43448 5.51400 5.64561 6.04446 6.25674 6.46405 6.56786 6.76404 6.86077 7.32782 8.87995 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.003534 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.719742 B = 7921.702385 C = 8275.211327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 H 0.109 0.891 4 N -0.683 5.683 5 C 0.088 3.912 6 C -0.005 4.005 7 C -0.530 4.530 8 H 0.037 0.963 9 C 0.006 3.994 10 N -0.951 5.951 11 Si 0.950 3.050 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.247 1.247 15 C 0.079 3.921 16 N -0.491 5.491 17 C 0.141 3.859 18 C -0.335 4.335 19 C 0.578 3.422 20 O -0.548 6.548 21 O -0.494 6.494 22 S 0.253 5.747 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.350 0.650 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.212 0.788 33 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -7.074 -24.945 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 H 0.127 0.873 4 N -0.315 5.315 5 C -0.040 4.040 6 C -0.043 4.043 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.191 4.191 10 N -0.591 5.591 11 Si 0.774 3.226 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.171 1.171 15 C -0.195 4.195 16 N -0.205 5.205 17 C -0.020 4.020 18 C -0.458 4.458 19 C 0.422 3.578 20 O -0.441 6.441 21 O -0.308 6.308 22 S 0.513 5.487 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.170 0.830 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -2.822 -5.894 -24.556 25.411 hybrid contribution -0.205 -1.302 0.073 1.320 sum -3.027 -7.196 -24.483 25.698 Atomic orbital electron populations 1.22416 0.93033 1.03519 1.03911 1.20282 0.94794 0.96378 0.84957 0.87286 1.60340 1.57820 1.10101 1.03214 1.21705 0.98971 0.94605 0.88760 1.19430 0.96583 0.95714 0.92597 1.21407 1.43584 0.97178 0.94690 0.94464 1.25951 0.95138 1.02500 0.95480 1.70054 1.49271 1.37792 1.02018 0.85655 0.79350 0.80009 0.77567 1.19617 1.21058 1.17052 1.27864 0.98093 0.92983 1.00517 1.66115 1.20047 1.12494 1.21840 1.23088 0.91043 1.02193 0.85674 1.25021 1.20686 0.98755 1.01294 1.18932 0.73883 0.81078 0.83956 1.90957 1.49019 1.44137 1.59962 1.84519 1.76884 1.28051 1.41383 1.84008 1.51796 1.05530 1.07321 0.91584 0.90949 0.90036 0.83012 0.91965 0.95027 0.96208 0.96421 0.92497 0.77141 0.69791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 9.14 71.98 0.66 -2.63 16 2 C 0.15 3.53 3.08 44.17 0.14 3.67 16 3 H 0.11 2.38 7.80 -2.39 -0.02 2.36 16 4 N -0.68 -20.72 6.20 -495.45 -3.07 -23.79 16 5 C 0.09 3.24 5.42 86.30 0.47 3.70 16 6 C -0.01 -0.24 4.30 29.85 0.13 -0.12 16 7 C -0.53 -30.08 9.66 25.60 0.25 -29.84 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 9 C 0.01 0.36 5.47 84.65 0.46 0.83 16 10 N -0.95 -59.39 13.96 21.44 0.30 -59.09 16 11 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 15 C 0.08 1.83 6.24 88.46 0.55 2.38 16 16 N -0.49 -11.88 10.45 -189.54 -1.98 -13.86 16 17 C 0.14 2.82 11.20 84.48 0.95 3.76 16 18 C -0.34 -6.93 6.51 24.08 0.16 -6.78 16 19 C 0.58 11.31 8.30 69.98 0.58 11.89 16 20 O -0.55 -13.90 17.75 19.48 0.35 -13.55 16 21 O -0.49 -5.85 13.23 -57.92 -0.77 -6.61 16 22 S 0.25 5.22 23.00 -56.49 -1.30 3.92 16 23 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 24 H 0.07 1.47 7.45 -2.38 -0.02 1.45 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.35 10.43 8.47 -89.69 -0.76 9.67 16 27 H 0.06 2.32 8.06 -2.39 -0.02 2.30 16 28 H 0.03 1.13 7.44 -2.39 -0.02 1.11 16 29 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 30 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.21 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.44 0.99 9.11 -74.06 -0.67 0.31 16 Total: -1.00 -71.82 305.87 -0.59 -72.41 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -0.33 Total: 7.26 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.34 Total: -13.12 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -4.75 Total: -96.74 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.42 Total: -20.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.30 Total: 3.92 kcal Total: -71.82 -0.59 -72.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604340292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.653 kcal (2) G-P(sol) polarization free energy of solvation -71.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds