Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21286 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 O 1.42903 * 109.47207 * 180.02562 * 16 14 13 18 18 C 1.35955 * 116.99811 * 180.02562 * 17 16 14 19 19 C 1.38263 * 121.63679 * 179.73626 * 18 17 16 20 20 C 1.35061 * 114.72303 * 179.80587 * 19 18 17 21 21 S 1.72032 * 105.59905 * 0.41832 * 20 19 18 22 22 N 1.30342 * 121.63743 * 0.02883 * 18 17 16 23 23 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 24 24 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 25 25 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 27 27 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 28 28 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 29 29 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 30 30 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 31 31 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 32 32 H 1.08000 * 122.63890 * 0.02562 * 19 18 17 33 33 H 1.08003 * 127.20238 * 180.17676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6304 0.4600 16 6 0.0606 3.3290 2.6792 17 8 -1.2661 3.8485 2.5684 18 6 -1.7713 4.4881 3.6566 19 6 -3.0424 5.0321 3.6528 20 6 -3.4038 5.6313 4.8080 21 16 -2.0503 5.4677 5.8572 22 7 -1.0790 4.6234 4.7526 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.9548 0.8552 -0.5318 29 1 2.2902 2.1166 1.9978 30 1 0.0991 2.6017 3.4901 31 1 0.7539 4.1436 2.8885 32 1 -3.6962 4.9789 2.7948 33 1 -4.3442 6.1156 5.0260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611083537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = -30.487885 kcal Electronic energy + Delta-G solvation = -18208.134062 eV Core-core repulsion = 15168.457621 eV Total energy + Delta-G solvation = -3039.676441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41476 -39.09227 -36.74711 -35.20288 -32.52760 -31.63080 -31.39849 -28.84378 -26.94630 -24.37167 -22.36512 -20.83950 -20.73155 -19.61892 -18.56418 -17.80835 -17.66496 -16.59237 -16.28732 -15.50426 -14.86471 -14.54315 -14.34403 -13.72541 -13.42474 -13.26483 -12.72484 -12.53079 -12.47328 -12.28688 -11.78121 -11.50201 -11.12054 -10.93392 -10.91182 -10.72415 -10.46229 -9.99884 -9.91900 -9.61861 -9.27702 -9.06838 -8.52757 -8.37539 -8.18090 -6.61373 -4.25781 0.45737 1.17330 1.49571 2.27346 2.72863 3.07115 3.37050 3.43393 3.58161 4.00563 4.39367 4.52212 4.95296 5.04929 5.13182 5.18819 5.23816 5.25316 5.46970 6.01161 6.04849 6.07434 6.24465 6.64717 6.76379 6.90056 6.92700 7.00926 7.31473 7.34230 7.58530 8.19669 8.35506 8.64370 8.86560 9.43469 10.79567 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041381 B = 0.003815 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.481865 B = 7337.659827 C = 7633.417779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.043 0.957 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.695 5.695 14 C 0.503 3.497 15 O -0.529 6.529 16 C 0.048 3.952 17 O -0.264 6.264 18 C 0.314 3.686 19 C -0.198 4.198 20 C -0.186 4.186 21 S 0.275 5.725 22 N -0.530 5.530 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.269 0.731 29 H 0.395 0.605 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.734 8.115 13.271 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.146 3.854 4 H 0.061 0.939 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.345 5.345 14 C 0.287 3.713 15 O -0.407 6.407 16 C -0.031 4.031 17 O -0.168 6.168 18 C 0.100 3.900 19 C -0.234 4.234 20 C -0.333 4.333 21 S 0.423 5.577 22 N -0.371 5.371 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.228 0.772 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.184 0.816 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.899 7.523 12.326 20.749 hybrid contribution -0.611 0.437 0.689 1.020 sum -15.511 7.960 13.015 21.757 Atomic orbital electron populations 1.21893 0.97330 0.98996 1.01962 1.22377 0.93828 0.99663 1.02013 1.19106 0.95911 0.88571 0.81785 0.93905 1.22087 0.89547 1.49735 1.04254 0.91964 1.25685 0.97538 0.92296 1.01180 1.70874 1.07048 1.40751 1.34319 0.84121 0.75506 0.77786 0.75859 1.20856 1.19441 1.20557 1.46132 1.13893 1.55950 1.18529 1.19854 0.83361 0.79914 0.88205 1.90711 1.50537 1.58858 1.40562 1.22552 0.82275 0.99743 0.98498 1.86397 1.31382 1.68074 1.30960 1.20385 0.90942 0.92457 0.86244 1.20420 0.95902 1.05275 1.01839 1.26493 1.05915 1.03136 0.97797 1.83950 1.01364 1.52274 1.20161 1.76610 1.27560 1.27091 1.05833 0.93408 0.92939 0.94944 0.91112 0.92968 0.92067 0.77209 0.88945 0.88844 0.81573 0.79212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.53 37.15 0.32 -2.63 16 2 C -0.14 -3.12 5.28 -26.73 -0.14 -3.26 16 3 C 0.25 5.90 1.82 -69.08 -0.13 5.78 16 4 H 0.04 1.11 6.26 -51.93 -0.32 0.78 16 5 C -0.62 -16.56 9.01 -34.44 -0.31 -16.87 16 6 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -26.56 13.69 55.43 0.76 -25.80 16 9 Si 1.04 24.95 26.27 -169.99 -4.47 20.49 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.01 5.67 56.52 0.32 -5.69 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.70 -13.87 5.03 -54.93 -0.28 -14.14 16 14 C 0.50 9.68 6.50 -10.99 -0.07 9.61 16 15 O -0.53 -11.96 13.64 -14.36 -0.20 -12.16 16 16 C 0.05 0.74 5.87 36.01 0.21 0.95 16 17 O -0.26 -4.24 9.71 -39.51 -0.38 -4.63 16 18 C 0.31 4.24 7.42 -18.17 -0.13 4.11 16 19 C -0.20 -2.05 10.20 -40.70 -0.42 -2.47 16 20 C -0.19 -1.41 11.41 29.60 0.34 -1.07 16 21 S 0.27 2.51 23.71 -107.50 -2.55 -0.04 16 22 N -0.53 -6.97 11.14 28.92 0.32 -6.65 16 23 H 0.05 0.97 5.63 -51.92 -0.29 0.67 16 24 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.64 4.74 -51.92 -0.25 1.39 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 29 H 0.39 6.93 8.53 -40.82 -0.35 6.58 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.19 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -32.07 292.81 -6.61 -38.69 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.81 Total: 4.66 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.43 Total: -4.83 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.80 Total: -46.59 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.58 Total: -16.78 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.47 Total: 20.49 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.55 Total: -0.04 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.07 -6.61 -38.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611083537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.198 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds