Wall clock time and date at job start Mon Mar 30 2020 01:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21286 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 O 1.42903 * 109.47207 * 180.02562 * 16 14 13 18 18 C 1.35955 * 116.99811 * 180.02562 * 17 16 14 19 19 C 1.38263 * 121.63679 * 179.73626 * 18 17 16 20 20 C 1.35061 * 114.72303 * 179.80587 * 19 18 17 21 21 S 1.72032 * 105.59905 * 0.41832 * 20 19 18 22 22 N 1.30342 * 121.63743 * 0.02883 * 18 17 16 23 23 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 24 24 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 25 25 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 27 27 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 28 28 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 29 29 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 30 30 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 31 31 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 32 32 H 1.08000 * 122.63890 * 0.02562 * 19 18 17 33 33 H 1.08003 * 127.20238 * 180.17676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6304 0.4600 16 6 0.0606 3.3290 2.6792 17 8 -1.2661 3.8485 2.5684 18 6 -1.7713 4.4881 3.6566 19 6 -3.0424 5.0321 3.6528 20 6 -3.4038 5.6313 4.8080 21 16 -2.0503 5.4677 5.8572 22 7 -1.0790 4.6234 4.7526 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.9548 0.8552 -0.5318 29 1 2.2902 2.1166 1.9978 30 1 0.0991 2.6017 3.4901 31 1 0.7539 4.1436 2.8885 32 1 -3.6962 4.9789 2.7948 33 1 -4.3442 6.1156 5.0260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611083537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:01 Heat of formation + Delta-G solvation = -54.856743 kcal Electronic energy + Delta-G solvation = -18209.190775 eV Core-core repulsion = 15168.457621 eV Total energy + Delta-G solvation = -3040.733154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52282 -40.53289 -37.82638 -36.93841 -34.52767 -33.37044 -32.18776 -30.26512 -28.69513 -25.32081 -24.24697 -22.46404 -21.63486 -21.31858 -19.96415 -19.20094 -18.69760 -17.80589 -17.76724 -17.17510 -16.29802 -15.78676 -15.29445 -15.25419 -14.76258 -14.57491 -14.48012 -14.29815 -13.92962 -13.69760 -13.56392 -12.72048 -12.51688 -12.33401 -12.27883 -12.19644 -11.80527 -11.73134 -11.42376 -11.14508 -10.84611 -10.77979 -10.50474 -9.91932 -9.32403 -8.82110 -6.47103 -0.27632 0.41667 0.72064 1.41695 1.44644 1.49708 1.55155 1.59166 1.70223 2.40095 2.69962 2.99200 3.63438 3.73342 4.01190 4.02642 4.29359 4.37315 4.37817 4.50940 4.54278 4.79132 4.81682 5.07807 5.12210 5.17009 5.26003 5.51601 5.55446 5.63433 5.95185 5.99294 6.49714 6.69864 7.21719 7.32226 8.57967 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041381 B = 0.003815 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.481865 B = 7337.659827 C = 7633.417779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.253 3.747 4 H 0.024 0.976 5 C -0.615 4.615 6 H 0.042 0.958 7 C -0.004 4.004 8 N -0.927 5.927 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.242 1.242 12 H -0.275 1.275 13 N -0.695 5.695 14 C 0.505 3.495 15 O -0.563 6.563 16 C 0.063 3.937 17 O -0.290 6.290 18 C 0.294 3.706 19 C -0.225 4.225 20 C -0.153 4.153 21 S 0.307 5.693 22 N -0.570 5.570 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.258 0.742 29 H 0.406 0.594 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.176 0.824 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.196 8.711 14.587 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.042 0.958 5 C -0.653 4.653 6 H 0.060 0.940 7 C -0.205 4.205 8 N -0.562 5.562 9 Si 0.892 3.108 10 H -0.208 1.208 11 H -0.167 1.167 12 H -0.200 1.200 13 N -0.346 5.346 14 C 0.290 3.710 15 O -0.443 6.443 16 C -0.015 4.015 17 O -0.195 6.195 18 C 0.081 3.919 19 C -0.260 4.260 20 C -0.300 4.300 21 S 0.455 5.545 22 N -0.411 5.411 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.241 0.759 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.194 0.806 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.368 8.131 13.695 23.566 hybrid contribution 0.108 0.379 0.468 0.612 sum -17.261 8.510 14.163 23.895 Atomic orbital electron populations 1.21776 0.95593 1.00500 1.01322 1.22267 0.95273 0.98168 1.01835 1.18818 0.93614 0.89786 0.82936 0.95792 1.22275 0.91319 1.48311 1.03356 0.94019 1.26805 0.97702 0.92033 1.03935 1.70975 1.08027 1.43161 1.34043 0.83743 0.75223 0.78688 0.73144 1.20756 1.16689 1.20030 1.45938 1.14818 1.56074 1.17745 1.20419 0.82338 0.79013 0.89206 1.90688 1.51397 1.60009 1.42170 1.22314 0.82921 1.00258 0.96038 1.86322 1.31287 1.68991 1.32898 1.20742 0.92045 0.93325 0.85818 1.20587 0.95222 1.06731 1.03484 1.27010 1.06569 1.00643 0.95740 1.83841 1.01243 1.50723 1.18722 1.76395 1.29703 1.28399 1.06576 0.93583 0.94074 0.92296 0.91999 0.92439 0.93222 0.75885 0.87127 0.87594 0.80637 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.53 71.98 0.61 -4.64 16 2 C -0.14 -5.92 5.28 30.59 0.16 -5.76 16 3 C 0.25 11.92 1.82 44.24 0.08 12.00 16 4 H 0.02 1.24 6.26 -2.39 -0.01 1.23 16 5 C -0.61 -33.30 9.01 25.60 0.23 -33.07 16 6 H 0.04 2.38 7.96 -2.91 -0.02 2.36 16 7 C 0.00 -0.22 5.32 84.66 0.45 0.23 16 8 N -0.93 -55.93 13.69 21.45 0.29 -55.63 16 9 Si 1.07 50.14 26.27 68.60 1.80 51.94 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.24 -10.29 5.67 99.48 0.56 -9.73 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 N -0.70 -27.47 5.03 -446.10 -2.24 -29.72 16 14 C 0.50 19.16 6.50 87.66 0.57 19.73 16 15 O -0.56 -25.34 13.64 15.99 0.22 -25.12 16 16 C 0.06 1.89 5.87 71.24 0.42 2.31 16 17 O -0.29 -9.15 9.71 -74.01 -0.72 -9.87 16 18 C 0.29 7.61 7.42 84.92 0.63 8.24 16 19 C -0.23 -4.19 10.20 21.54 0.22 -3.97 16 20 C -0.15 -1.75 11.41 67.09 0.77 -0.98 16 21 S 0.31 4.79 23.71 -56.49 -1.34 3.45 16 22 N -0.57 -14.18 11.14 -176.08 -1.96 -16.14 16 23 H 0.05 1.80 5.63 -2.38 -0.01 1.78 16 24 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 26 H 0.06 2.78 4.74 -2.38 -0.01 2.77 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.26 15.60 8.73 -92.71 -0.81 14.79 16 29 H 0.41 14.10 8.53 -92.71 -0.79 13.31 16 30 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.23 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -70.18 292.81 0.36 -69.82 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.17 Total: 17.18 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.14 Total: -5.91 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -3.91 Total: -101.49 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.50 Total: -34.99 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 1.80 Total: 51.94 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.34 Total: 3.45 kcal Total: -70.18 0.36 -69.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611083537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.962 kcal (2) G-P(sol) polarization free energy of solvation -70.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds