Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00173 * 2 1 4 4 H 1.48507 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47122 * 299.99512 * 3 2 1 6 6 H 1.48499 * 109.47418 * 59.99506 * 3 2 1 7 7 C 1.37879 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99990 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47135 * 299.99521 * 9 7 2 11 11 O 1.42902 * 109.47341 * 59.99952 * 9 7 2 12 12 C 1.52998 * 109.47010 * 179.97438 * 9 7 2 13 13 S 1.81404 * 109.47228 * 180.02562 * 12 9 7 14 14 C 1.76200 * 103.00105 * 179.97438 * 13 12 9 15 15 N 1.31090 * 126.00997 * 0.02562 * 14 13 12 16 16 N 1.40100 * 107.98705 * 179.97438 * 15 14 13 17 17 C 1.31024 * 108.00966 * 0.02562 * 16 15 14 18 18 N 1.38903 * 125.99109 * 180.02562 * 17 16 15 19 19 N 1.36607 * 108.02373 * 0.26343 * 17 16 15 20 20 C 1.46500 * 126.00253 * 179.73577 * 19 17 16 21 21 C 1.52998 * 117.49439 * 197.93391 * 20 19 17 22 22 C 1.52994 * 117.49810 * 129.27411 * 20 19 17 23 23 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 24 24 H 0.96699 * 113.99610 * 59.99645 * 11 9 7 25 25 H 1.09001 * 109.47239 * 59.99987 * 12 9 7 26 26 H 1.09007 * 109.47127 * 299.99721 * 12 9 7 27 27 H 0.97004 * 119.99428 * 354.60433 * 18 17 16 28 28 H 0.96993 * 120.00529 * 174.32768 * 18 17 16 29 29 H 1.08997 * 115.54882 * 343.60469 * 20 19 17 30 30 H 1.08997 * 117.50717 * 0.02562 * 21 20 19 31 31 H 1.09008 * 117.49510 * 145.02132 * 21 20 19 32 32 H 1.08998 * 117.50226 * 214.97492 * 22 20 19 33 33 H 1.09008 * 117.50162 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2452 -3.6621 0.0005 13 16 1.3381 -5.2331 -0.0002 14 6 2.6268 -6.4348 -0.0009 15 7 3.9136 -6.1849 -0.0004 16 7 4.5923 -7.4105 -0.0006 17 6 3.6985 -8.3685 -0.0019 18 7 3.9634 -9.7321 -0.0020 19 7 2.4604 -7.7914 -0.0084 20 6 1.1792 -8.5018 -0.0173 21 6 -0.0622 -7.7144 -0.4414 22 6 0.1385 -8.0948 1.0276 23 1 -0.4850 0.8400 -0.0004 24 1 0.9223 -2.5299 -1.9975 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 4.8771 -10.0486 -0.0802 28 1 3.2354 -10.3676 0.0800 29 1 1.2272 -9.5544 -0.2964 30 1 0.0744 -6.6680 -0.7142 31 1 -0.8311 -8.2491 -0.9992 32 1 -0.4986 -8.8795 1.4358 33 1 0.4071 -7.2987 1.7221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001613474770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = 41.140235 kcal Electronic energy + Delta-G solvation = -18185.106634 eV Core-core repulsion = 15180.828972 eV Total energy + Delta-G solvation = -3004.277662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.95117 -38.36331 -37.86739 -35.81298 -34.28873 -32.95597 -31.65499 -30.45359 -27.36449 -24.93682 -23.60350 -23.32190 -23.06295 -21.72497 -19.25634 -19.04752 -18.29374 -17.17951 -16.99422 -16.69891 -16.47268 -16.23028 -15.97036 -15.76651 -15.27883 -14.65442 -14.14328 -13.55679 -13.25431 -12.92221 -12.79939 -12.74472 -12.69877 -12.47092 -12.20530 -12.17046 -12.02720 -11.58504 -11.33854 -10.99490 -10.70827 -10.55969 -10.31306 -9.78273 -8.55230 -8.16971 -6.43099 -0.04011 0.80200 1.20278 1.31039 1.40982 1.43587 1.51615 1.55587 2.40046 2.50797 2.70870 3.09451 3.39072 3.71105 3.82593 4.02827 4.08309 4.18224 4.24348 4.31395 4.65932 4.74545 4.87926 4.94525 5.06930 5.14932 5.46854 5.51853 5.66010 5.98226 6.28414 6.43914 6.65489 7.23224 7.28575 7.45604 8.87559 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.004630 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.722255 B = 6045.795137 C = 6735.726271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.033 3.967 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.585 4.585 8 H 0.058 0.942 9 C 0.253 3.747 10 H 0.039 0.961 11 O -0.569 6.569 12 C -0.130 4.130 13 S 0.045 5.955 14 C 0.191 3.809 15 N -0.351 5.351 16 N -0.421 5.421 17 C 0.491 3.509 18 N -0.802 5.802 19 N -0.479 5.479 20 C 0.037 3.963 21 C -0.184 4.184 22 C -0.170 4.170 23 H 0.265 0.735 24 H 0.360 0.640 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.433 0.567 28 H 0.425 0.575 29 H 0.185 0.815 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -22.268 -0.357 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.170 4.170 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.625 4.625 8 H 0.076 0.924 9 C 0.193 3.807 10 H 0.057 0.943 11 O -0.373 6.373 12 C -0.278 4.278 13 S 0.275 5.725 14 C -0.192 4.192 15 N -0.184 5.184 16 N -0.262 5.262 17 C 0.125 3.875 18 N -0.364 5.364 19 N -0.185 5.185 20 C -0.067 4.067 21 C -0.223 4.223 22 C -0.208 4.208 23 H 0.074 0.926 24 H 0.205 0.795 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.267 0.733 28 H 0.259 0.741 29 H 0.202 0.798 30 H 0.114 0.886 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.958 -21.519 0.100 21.540 hybrid contribution 1.304 0.416 -0.256 1.393 sum 0.346 -21.103 -0.156 21.106 Atomic orbital electron populations 1.70189 1.07425 1.27637 1.47743 1.25818 0.95534 1.02619 0.93052 0.85485 0.78944 0.79059 0.77955 1.19243 1.20115 1.20186 1.21903 0.93521 0.91945 1.55097 0.92416 1.18892 0.87169 0.88702 0.85919 0.94333 1.86507 1.38713 1.96154 1.15920 1.24677 1.02801 0.95296 1.05055 1.85615 1.01116 0.93731 1.92052 1.26667 0.99405 0.87670 1.05435 1.78114 1.01160 1.16017 1.23111 1.77946 1.21334 0.93530 1.33408 1.21118 0.81439 0.89675 0.95284 1.40956 1.13963 0.96750 1.84740 1.45714 1.06991 1.03128 1.62619 1.22580 0.77120 0.98158 1.08797 1.23865 0.97759 1.01532 0.99101 1.23614 1.00183 1.04635 0.92395 0.92634 0.79472 0.90468 0.90423 0.73272 0.74109 0.79785 0.88585 0.83431 0.83473 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.31 12.84 21.45 0.28 -52.04 16 2 C 0.03 1.85 5.40 84.66 0.46 2.31 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.59 -32.38 8.76 25.60 0.22 -32.15 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.25 12.89 2.88 29.85 0.09 12.98 16 10 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 11 O -0.57 -28.62 12.32 -148.98 -1.84 -30.45 16 12 C -0.13 -5.68 5.21 71.98 0.38 -5.31 16 13 S 0.05 1.64 16.82 -56.49 -0.95 0.69 16 14 C 0.19 6.87 7.91 179.56 1.42 8.28 16 15 N -0.35 -14.71 12.29 -56.87 -0.70 -15.41 16 16 N -0.42 -15.66 12.72 -57.80 -0.74 -16.40 16 17 C 0.49 13.28 9.14 259.96 2.38 15.66 16 18 N -0.80 -11.02 9.08 -57.82 -0.53 -11.54 16 19 N -0.48 -12.98 3.13 -503.06 -1.57 -14.55 16 20 C 0.04 0.61 6.70 44.99 0.30 0.91 16 21 C -0.18 -3.28 9.67 30.62 0.30 -2.98 16 22 C -0.17 -2.74 9.92 30.62 0.30 -2.44 16 23 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.36 16.17 9.04 -74.06 -0.67 15.50 16 25 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 26 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 27 H 0.43 4.65 8.95 -92.71 -0.83 3.82 16 28 H 0.43 2.54 8.09 -92.71 -0.75 1.79 16 29 H 0.19 1.34 7.48 -2.39 -0.02 1.32 16 30 H 0.10 2.45 4.30 -18.59 -0.08 2.37 16 31 H 0.15 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.85 7.65 -2.38 -0.02 1.83 16 Total: -1.00 -76.24 297.93 0.69 -75.55 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -1.14 Total: 21.40 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.84 Total: -2.73 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -3.26 Total: -109.94 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.84 Total: -30.45 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -0.95 Total: 0.69 kcal Total: -76.24 0.69 -75.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613474770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.695 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds