Wall clock time and date at job start Mon Mar 30 2020 01:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.35248 * 126.69447 * 120.00002 * 4 2 1 6 6 C 1.42023 * 103.95596 * 180.02562 * 5 4 2 7 7 N 1.39503 * 126.89508 * 180.02562 * 6 5 4 8 8 C 1.34772 * 119.99973 * 359.97438 * 7 6 5 9 9 O 1.21274 * 119.99999 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00352 * 180.02562 * 8 7 6 11 11 S 1.80997 * 109.47627 * 179.97438 * 10 8 7 12 12 C 1.76194 * 100.00210 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99899 * 359.97438 * 12 11 10 14 14 C 1.38798 * 119.99979 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00148 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00186 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47287 * 89.99958 * 16 14 12 18 18 H 1.48500 * 109.47461 * 210.00241 * 16 14 12 19 19 H 1.48508 * 109.47438 * 330.00481 * 16 14 12 20 20 N 1.30716 * 106.21174 * 359.97438 * 6 5 4 21 21 O 1.20914 * 111.47720 * 359.70620 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.08003 * 128.02433 * 359.97438 * 5 4 2 30 30 H 0.97003 * 120.00039 * 179.97438 * 7 6 5 31 31 H 1.09006 * 109.46683 * 299.99852 * 10 8 7 32 32 H 1.09004 * 109.47263 * 59.99393 * 10 8 7 33 33 H 0.96995 * 120.00228 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8130 -1.8143 1.2641 6 6 2.9904 -2.0662 2.6505 7 7 3.7244 -3.1036 3.2260 8 6 4.3571 -3.9978 2.4408 9 8 4.2881 -3.9008 1.2340 10 6 5.1495 -5.1188 3.0625 11 16 5.8732 -6.1425 1.7570 12 6 6.7186 -7.3371 2.7381 13 1 6.6774 -7.2777 3.8157 14 6 7.4383 -8.3539 2.1261 15 7 8.0703 -9.2462 2.8590 16 14 7.5102 -8.4563 0.2624 17 1 8.6718 -7.6744 -0.2320 18 1 7.6569 -9.8752 -0.1503 19 1 6.2588 -7.9005 -0.3126 20 7 2.3289 -1.1303 3.2790 21 8 1.7977 -0.3679 2.5053 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 3.2089 -2.3749 0.4301 30 1 3.7793 -3.1814 4.1914 31 1 5.9447 -4.7022 3.6809 32 1 4.4914 -5.7300 3.6802 33 1 8.5730 -9.9570 2.4314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001623803929.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:02 Heat of formation + Delta-G solvation = 16.681904 kcal Electronic energy + Delta-G solvation = -17673.437501 eV Core-core repulsion = 14635.806496 eV Total energy + Delta-G solvation = -3037.631006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.89595 -39.81692 -36.28707 -35.49746 -32.53317 -32.49084 -30.65515 -29.37301 -27.50843 -25.71236 -23.75652 -23.35139 -21.31620 -20.25072 -17.93554 -17.63865 -17.25541 -16.70554 -16.47264 -15.37443 -15.24626 -15.05544 -14.42205 -14.02778 -13.70060 -13.56071 -13.37052 -12.87333 -12.74222 -12.53227 -11.80392 -11.65408 -11.63373 -11.52730 -11.35924 -11.07523 -11.05963 -10.75130 -9.98772 -9.83016 -9.49080 -9.08161 -8.82994 -8.63965 -7.03506 -6.36094 -4.09969 1.36647 2.02946 2.34466 2.92726 2.94342 3.07645 3.27233 3.43177 3.47063 4.11561 4.25536 4.51027 4.57207 4.73101 4.74800 4.88765 5.02798 5.10703 5.17511 5.28929 5.40281 5.47588 5.54182 5.56548 5.66699 5.81028 5.88188 5.88261 6.00036 6.39979 7.09742 7.86696 8.05119 8.28422 8.34616 9.09232 10.73066 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039634 B = 0.003646 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.285724 B = 7676.967746 C = 8192.192134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.012 4.012 3 C -0.150 4.150 4 C -0.022 4.022 5 C -0.221 4.221 6 C 0.255 3.745 7 N -0.636 5.636 8 C 0.540 3.460 9 O -0.492 6.492 10 C -0.122 4.122 11 S -0.134 6.134 12 C -0.524 4.524 13 H 0.090 0.910 14 C 0.097 3.903 15 N -0.878 5.878 16 Si 0.857 3.143 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.235 1.235 20 N -0.397 5.397 21 O 0.095 5.905 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.191 0.809 30 H 0.419 0.581 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 18.381 -3.710 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 C -0.207 4.207 4 C -0.085 4.085 5 C -0.244 4.244 6 C 0.005 3.995 7 N -0.289 5.289 8 C 0.327 3.673 9 O -0.363 6.363 10 C -0.273 4.273 11 S 0.092 5.908 12 C -0.672 4.672 13 H 0.108 0.892 14 C -0.112 4.112 15 N -0.514 5.514 16 Si 0.681 3.319 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.159 1.159 20 N -0.114 5.114 21 O 0.036 5.964 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.256 0.744 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.277 18.624 -4.452 23.301 hybrid contribution 0.686 -0.914 0.680 1.330 sum -12.590 17.710 -3.773 22.055 Atomic orbital electron populations 1.21884 0.93207 1.02782 1.02832 1.19779 0.96631 0.96035 0.90654 1.21885 1.01755 0.94240 1.02836 1.24377 0.99762 0.96959 0.87438 1.22786 1.04928 0.99938 0.96760 1.20572 0.96376 0.91559 0.90956 1.42720 1.49504 1.25439 1.11260 1.20557 0.78101 0.81596 0.87067 1.90644 1.59060 1.72484 1.14114 1.23265 1.02053 0.97424 1.04515 1.84797 1.64836 1.31314 1.09837 1.22284 1.36018 1.13171 0.95714 0.89188 1.24707 0.93549 0.94031 0.98950 1.69930 1.30954 1.14487 1.36027 0.86741 0.81346 0.78600 0.85192 1.19124 1.19804 1.15934 1.74023 1.16109 1.05277 1.16013 1.84744 1.56266 1.42255 1.13154 0.91818 0.92025 0.91344 0.87788 0.91816 0.92023 0.91345 0.79205 0.74443 0.87659 0.87615 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.18 37.16 0.34 -0.66 16 2 C -0.01 -0.09 3.34 -91.78 -0.31 -0.40 16 3 C -0.15 -1.00 9.18 37.16 0.34 -0.66 16 4 C -0.02 -0.25 5.98 -35.37 -0.21 -0.46 16 5 C -0.22 -3.14 9.78 -39.20 -0.38 -3.52 16 6 C 0.25 3.82 8.18 -154.82 -1.27 2.56 16 7 N -0.64 -9.03 5.42 -11.44 -0.06 -9.09 16 8 C 0.54 9.22 7.81 -10.99 -0.09 9.13 16 9 O -0.49 -9.72 13.14 5.56 0.07 -9.65 16 10 C -0.12 -2.21 6.16 36.01 0.22 -1.99 16 11 S -0.13 -3.23 18.55 -107.50 -1.99 -5.22 16 12 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 13 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 14 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 15 N -0.88 -25.99 13.97 55.49 0.78 -25.21 16 16 Si 0.86 21.14 27.74 -169.99 -4.71 16.43 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 20 N -0.40 -5.79 12.10 31.19 0.38 -5.42 16 21 O 0.10 1.24 11.19 17.06 0.19 1.43 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.19 2.87 6.22 -52.48 -0.33 2.54 16 30 H 0.42 4.69 8.82 -40.82 -0.36 4.33 16 31 H 0.11 1.75 8.14 -51.91 -0.42 1.33 16 32 H 0.11 1.76 8.14 -51.91 -0.42 1.33 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -32.34 302.84 -5.99 -38.33 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.07 Total: 1.51 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.13 Total: -7.67 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 1.09 Total: -39.72 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.26 Total: -8.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.99 Total: -5.22 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.34 -5.99 -38.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623803929.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.016 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds