Wall clock time and date at job start Mon Mar 30 2020 01:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.35248 * 126.69447 * 120.00002 * 4 2 1 6 6 C 1.42023 * 103.95596 * 180.02562 * 5 4 2 7 7 N 1.39503 * 126.89508 * 180.02562 * 6 5 4 8 8 C 1.34772 * 119.99973 * 359.97438 * 7 6 5 9 9 O 1.21274 * 119.99999 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00352 * 180.02562 * 8 7 6 11 11 S 1.80997 * 109.47627 * 179.97438 * 10 8 7 12 12 C 1.76194 * 100.00210 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99899 * 359.97438 * 12 11 10 14 14 C 1.38798 * 119.99979 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00148 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00186 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47287 * 89.99958 * 16 14 12 18 18 H 1.48500 * 109.47461 * 210.00241 * 16 14 12 19 19 H 1.48508 * 109.47438 * 330.00481 * 16 14 12 20 20 N 1.30716 * 106.21174 * 359.97438 * 6 5 4 21 21 O 1.20914 * 111.47720 * 359.70620 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.08003 * 128.02433 * 359.97438 * 5 4 2 30 30 H 0.97003 * 120.00039 * 179.97438 * 7 6 5 31 31 H 1.09006 * 109.46683 * 299.99852 * 10 8 7 32 32 H 1.09004 * 109.47263 * 59.99393 * 10 8 7 33 33 H 0.96995 * 120.00228 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8130 -1.8143 1.2641 6 6 2.9904 -2.0662 2.6505 7 7 3.7244 -3.1036 3.2260 8 6 4.3571 -3.9978 2.4408 9 8 4.2881 -3.9008 1.2340 10 6 5.1495 -5.1188 3.0625 11 16 5.8732 -6.1425 1.7570 12 6 6.7186 -7.3371 2.7381 13 1 6.6774 -7.2777 3.8157 14 6 7.4383 -8.3539 2.1261 15 7 8.0703 -9.2462 2.8590 16 14 7.5102 -8.4563 0.2624 17 1 8.6718 -7.6744 -0.2320 18 1 7.6569 -9.8752 -0.1503 19 1 6.2588 -7.9005 -0.3126 20 7 2.3289 -1.1303 3.2790 21 8 1.7977 -0.3679 2.5053 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 3.2089 -2.3749 0.4301 30 1 3.7793 -3.1814 4.1914 31 1 5.9447 -4.7022 3.6809 32 1 4.4914 -5.7300 3.6802 33 1 8.5730 -9.9570 2.4314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001623803929.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:02 Heat of formation + Delta-G solvation = -3.802816 kcal Electronic energy + Delta-G solvation = -17674.325786 eV Core-core repulsion = 14635.806496 eV Total energy + Delta-G solvation = -3038.519290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.98345 -41.16676 -36.99711 -36.74218 -34.68558 -33.69372 -31.64335 -30.79369 -28.02192 -27.88561 -24.92040 -24.19583 -22.52293 -21.33167 -19.91083 -18.72901 -18.31582 -17.92931 -17.73190 -17.10694 -16.75755 -16.06940 -15.90649 -15.28679 -14.95421 -14.84997 -14.39382 -14.18920 -14.06656 -13.36463 -13.05735 -13.01727 -12.82175 -12.76863 -12.67419 -12.35034 -12.17065 -11.88941 -11.77230 -11.29743 -11.18050 -10.59648 -10.49653 -9.99844 -9.02772 -8.52482 -6.24512 0.30924 0.81739 0.84772 1.32039 1.33561 1.49198 1.66085 1.75160 2.10599 2.23759 2.61733 2.86067 3.16340 3.49038 3.77646 3.96508 4.02015 4.12849 4.15354 4.32643 4.38169 4.59058 4.79480 4.83014 4.97422 4.98512 5.12992 5.23457 5.37355 5.38745 5.69614 5.95047 6.11475 6.75128 6.92218 7.21155 8.59912 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039634 B = 0.003646 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.285724 B = 7676.967746 C = 8192.192134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.013 4.013 3 C -0.147 4.147 4 C 0.003 3.997 5 C -0.249 4.249 6 C 0.237 3.763 7 N -0.620 5.620 8 C 0.549 3.451 9 O -0.521 6.521 10 C -0.109 4.109 11 S -0.160 6.160 12 C -0.531 4.531 13 H 0.065 0.935 14 C 0.045 3.955 15 N -0.917 5.917 16 Si 0.914 3.086 17 H -0.262 1.262 18 H -0.260 1.260 19 H -0.233 1.233 20 N -0.406 5.406 21 O 0.099 5.901 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.180 0.820 30 H 0.433 0.567 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 20.074 -4.727 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 C -0.205 4.205 4 C -0.061 4.061 5 C -0.272 4.272 6 C -0.012 4.012 7 N -0.274 5.274 8 C 0.335 3.665 9 O -0.395 6.395 10 C -0.259 4.259 11 S 0.066 5.934 12 C -0.679 4.679 13 H 0.083 0.917 14 C -0.160 4.160 15 N -0.555 5.555 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.157 1.157 20 N -0.122 5.122 21 O 0.039 5.961 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.110 0.890 25 H 0.132 0.868 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.197 0.803 30 H 0.273 0.727 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.508 20.333 -5.426 25.561 hybrid contribution 0.967 -1.293 1.081 1.943 sum -13.541 19.040 -4.345 23.765 Atomic orbital electron populations 1.21890 0.91903 1.02644 1.04021 1.20056 0.97625 0.96602 0.88989 1.21890 1.01257 0.93296 1.04025 1.24981 0.97627 0.95766 0.87746 1.22767 1.06752 1.01368 0.96300 1.20748 0.96999 0.91934 0.91498 1.42364 1.48608 1.24644 1.11772 1.20200 0.78029 0.81612 0.86649 1.90647 1.60269 1.73260 1.15289 1.23209 1.02897 0.97183 1.02647 1.84664 1.64963 1.31516 1.12218 1.22457 1.36137 1.14183 0.95122 0.91724 1.25573 0.93316 0.93817 1.03317 1.70015 1.32082 1.15408 1.37996 0.85873 0.81419 0.79197 0.79935 1.18634 1.18484 1.15707 1.74021 1.16300 1.05344 1.16570 1.84723 1.55838 1.41831 1.13711 0.91874 0.92829 0.88975 0.86769 0.91871 0.92826 0.88978 0.80267 0.72748 0.85755 0.85721 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.18 71.98 0.66 -0.94 16 2 C -0.01 -0.18 3.34 -11.54 -0.04 -0.22 16 3 C -0.15 -1.60 9.18 71.98 0.66 -0.94 16 4 C 0.00 0.06 5.98 24.99 0.15 0.21 16 5 C -0.25 -6.89 9.78 22.52 0.22 -6.67 16 6 C 0.24 6.88 8.18 134.11 1.10 7.98 16 7 N -0.62 -16.81 5.42 -309.53 -1.68 -18.48 16 8 C 0.55 18.12 7.81 87.66 0.68 18.80 16 9 O -0.52 -20.33 13.14 -3.01 -0.04 -20.37 16 10 C -0.11 -3.80 6.16 71.24 0.44 -3.36 16 11 S -0.16 -7.63 18.55 -56.49 -1.05 -8.68 16 12 C -0.53 -29.88 10.04 67.95 0.68 -29.19 16 13 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 14 C 0.05 2.59 5.50 84.86 0.47 3.06 16 15 N -0.92 -54.93 13.97 21.65 0.30 -54.62 16 16 Si 0.91 43.54 27.74 68.60 1.90 45.44 16 17 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.23 -10.95 6.74 99.48 0.67 -10.28 16 20 N -0.41 -11.33 12.10 -56.32 -0.68 -12.01 16 21 O 0.10 2.42 11.19 71.21 0.80 3.21 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.11 1.37 8.12 -2.39 -0.02 1.35 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.18 5.42 6.22 -2.91 -0.02 5.40 16 30 H 0.43 8.96 8.82 -92.71 -0.82 8.14 16 31 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.12 3.93 8.14 -2.39 -0.02 3.92 16 33 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -69.44 302.84 4.85 -64.59 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.28 Total: 12.19 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 5.02 Total: -11.27 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.06 Total: -85.12 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.76 Total: -17.15 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.05 Total: -8.68 kcal Total: -69.44 4.85 -64.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623803929.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.783 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds