Wall clock time and date at job start Mon Mar 30 2020 00:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48506 * 109.46706 * 269.99645 * 3 2 1 5 5 H 1.48493 * 109.47386 * 29.99764 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99960 * 3 2 1 7 7 C 1.37878 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 O 1.42894 * 109.47263 * 179.72605 * 15 13 12 17 17 C 1.35949 * 116.99991 * 179.97438 * 16 15 13 18 18 C 1.38263 * 121.64318 * 179.74093 * 17 16 15 19 19 C 1.35060 * 114.72941 * 179.80719 * 18 17 16 20 20 S 1.72024 * 105.59463 * 0.41033 * 19 18 17 21 21 N 1.30339 * 121.63940 * 0.02562 * 17 16 15 22 22 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 24 24 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 25 25 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 26 26 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 27 27 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 28 28 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 29 29 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 30 30 H 1.09001 * 109.46564 * 299.73030 * 15 13 12 31 31 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 32 32 H 1.08007 * 122.63306 * 0.02562 * 18 17 16 33 33 H 1.07997 * 127.20131 * 180.17898 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0046 12 7 2.4320 -6.1007 0.0049 13 6 1.9827 -7.3713 0.0070 14 8 0.7903 -7.5929 0.0135 15 6 2.9619 -8.5169 0.0080 16 8 2.2474 -9.7543 0.0166 17 6 2.9878 -10.8945 0.0181 18 6 2.3956 -12.1439 0.0315 19 6 3.2621 -13.1799 0.0270 20 16 4.8297 -12.4716 0.0171 21 7 4.2908 -10.8637 0.0123 22 1 -0.4850 0.8401 -0.0004 23 1 0.6239 -2.5575 -0.8880 24 1 0.6245 -2.5563 0.8920 25 1 2.8717 -3.6036 0.8927 26 1 2.8717 -3.6053 -0.8872 27 1 0.8531 -5.0459 -0.8852 28 1 0.8536 -5.0438 0.8947 29 1 3.3857 -5.9234 0.0045 30 1 3.5848 -8.4631 -0.8849 31 1 3.5924 -8.4551 0.8950 32 1 1.3243 -12.2806 0.0411 33 1 3.0212 -14.2326 0.0327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628625404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:47 Heat of formation + Delta-G solvation = -40.413986 kcal Electronic energy + Delta-G solvation = -17038.760704 eV Core-core repulsion = 13998.653835 eV Total energy + Delta-G solvation = -3040.106869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64088 -39.34551 -36.90870 -35.43018 -33.38152 -31.55284 -31.43734 -29.20520 -26.53856 -24.57751 -22.96343 -20.94750 -20.82963 -20.16614 -18.63551 -17.92044 -16.98927 -16.85292 -16.37943 -15.55003 -15.29540 -14.70703 -14.51673 -14.31288 -14.26448 -13.46353 -13.29657 -12.89842 -12.31358 -11.88132 -11.81489 -11.65983 -11.37321 -11.08038 -10.92135 -10.77539 -10.61968 -10.14799 -9.97319 -9.90630 -9.42852 -9.14684 -8.90654 -8.68301 -8.39082 -6.03676 -4.06953 0.31346 1.02069 1.33949 2.11133 2.40955 2.58103 3.29765 3.36196 3.38836 3.53525 4.34707 4.42649 4.59296 4.82331 4.87724 4.88929 5.09575 5.32146 5.33310 5.63743 5.72164 5.82038 6.10553 6.36016 6.54758 6.68433 6.79499 6.95397 7.54365 7.60981 7.72938 7.94726 8.21467 8.35769 8.99647 9.57371 11.07587 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.063069 B = 0.002390 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.851070 B =11713.652755 C =12126.438640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.118 3.882 12 N -0.720 5.720 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.050 3.950 16 O -0.266 6.266 17 C 0.314 3.686 18 C -0.199 4.199 19 C -0.185 4.185 20 S 0.283 5.717 21 N -0.532 5.532 22 H 0.261 0.739 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.401 0.599 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.167 0.833 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 -26.660 0.041 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.373 5.373 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.029 4.029 16 O -0.170 6.170 17 C 0.099 3.901 18 C -0.235 4.235 19 C -0.332 4.332 20 S 0.431 5.569 21 N -0.373 5.373 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.235 0.765 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.185 0.815 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.399 -26.203 0.040 28.191 hybrid contribution -0.818 0.964 -0.004 1.264 sum 9.581 -25.239 0.036 26.997 Atomic orbital electron populations 1.69969 1.06065 1.26726 1.50484 1.25038 0.94872 0.99343 0.95253 0.86569 0.79786 0.83381 0.78106 1.20644 1.21194 1.19891 1.21193 0.92996 0.90908 1.51030 0.92621 1.19036 0.93844 0.90814 0.97726 1.21901 0.99822 0.93151 1.01021 1.21718 0.91736 0.84676 1.02300 1.46048 1.11198 1.05203 1.74803 1.19964 0.89236 0.83812 0.77647 1.90758 1.16352 1.84491 1.48259 1.22451 0.94128 0.81372 1.04947 1.86379 1.31774 1.11106 1.87753 1.20330 0.86888 0.88343 0.94518 1.20411 1.04031 0.88294 1.10754 1.26521 0.99087 1.04550 1.03065 1.83999 1.09052 0.94546 1.69336 1.76558 1.12017 1.15690 1.33000 0.92898 0.96218 0.96221 0.92598 0.92593 0.91492 0.91474 0.76524 0.88443 0.88439 0.81507 0.79108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 11 C 0.12 2.04 5.67 -4.04 -0.02 2.01 16 12 N -0.72 -10.02 5.56 -60.29 -0.33 -10.35 16 13 C 0.51 7.62 7.91 -10.98 -0.09 7.54 16 14 O -0.52 -10.18 16.50 -14.36 -0.24 -10.41 16 15 C 0.05 0.58 5.87 36.01 0.21 0.79 16 16 O -0.27 -3.54 9.71 -39.49 -0.38 -3.93 16 17 C 0.31 3.53 7.42 -18.18 -0.13 3.39 16 18 C -0.20 -1.69 10.20 -40.70 -0.42 -2.10 16 19 C -0.18 -1.10 11.41 29.60 0.34 -0.76 16 20 S 0.28 2.09 23.71 -107.50 -2.55 -0.46 16 21 N -0.53 -5.80 11.14 28.92 0.32 -5.48 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.40 4.30 8.47 -40.82 -0.35 3.95 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.19 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -34.00 309.81 -7.71 -41.71 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.11 Total: -1.68 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.80 Total: -4.46 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.72 Total: -41.85 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.62 Total: -14.34 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.55 Total: -0.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.00 -7.71 -41.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628625404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.296 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds