Wall clock time and date at job start Mon Mar 30 2020 00:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48499 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46893 * 300.00257 * 3 2 1 6 6 H 1.48495 * 109.46880 * 59.99869 * 3 2 1 7 7 C 1.37885 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99459 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47441 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47441 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99788 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99955 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00087 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47220 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.47472 * 60.00391 * 15 14 13 17 17 O 1.42906 * 109.47343 * 299.99945 * 15 14 13 18 18 C 1.50706 * 109.47049 * 180.02562 * 15 14 13 19 19 C 1.33641 * 126.03199 * 264.99889 * 18 15 14 20 20 N 1.31786 * 114.49506 * 179.97438 * 19 18 15 21 21 C 1.29021 * 117.12507 * 0.02562 * 20 19 18 22 22 S 1.70978 * 110.17026 * 359.72315 * 21 20 19 23 23 H 0.97006 * 119.99451 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47242 * 60.00145 * 9 7 2 25 25 H 1.08997 * 109.47155 * 300.00642 * 9 7 2 26 26 H 1.09001 * 109.47056 * 59.99697 * 10 9 7 27 27 H 1.09001 * 109.46950 * 300.00734 * 10 9 7 28 28 H 0.97003 * 120.00531 * 0.02562 * 13 11 10 29 29 H 1.09007 * 109.46426 * 60.00474 * 14 13 11 30 30 H 1.08997 * 109.47189 * 300.00815 * 14 13 11 31 31 H 0.96693 * 113.99950 * 300.00474 * 17 15 14 32 32 H 1.08001 * 122.75472 * 0.02562 * 19 18 15 33 33 H 1.08003 * 124.91171 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2449 -3.6622 -0.0005 11 6 1.4914 -4.9672 -0.0012 12 8 0.2785 -4.9671 -0.0021 13 7 2.1652 -6.1344 -0.0018 14 6 1.4326 -7.4032 -0.0019 15 6 2.4267 -8.5661 -0.0020 16 1 3.0534 -8.5086 0.8880 17 8 3.2483 -8.4904 -1.1688 18 6 1.6731 -9.8712 -0.0027 19 6 1.3613 -10.5995 1.0736 20 7 0.6953 -11.7059 0.8105 21 6 0.4285 -11.9515 -0.4277 22 16 1.0412 -10.7026 -1.4218 23 1 -0.4849 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 2.8716 -3.6045 0.8894 27 1 2.8717 -3.6045 -0.8905 28 1 3.1352 -6.1346 -0.0015 29 1 0.8056 -7.4606 -0.8917 30 1 0.8062 -7.4611 0.8883 31 1 2.7562 -8.5356 -1.9999 32 1 1.6321 -10.3051 2.0768 33 1 -0.1080 -12.8184 -0.7842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638157982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:35 Heat of formation + Delta-G solvation = -52.060667 kcal Electronic energy + Delta-G solvation = -17460.574486 eV Core-core repulsion = 14419.962579 eV Total energy + Delta-G solvation = -3040.611907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18515 -39.27284 -37.75550 -34.17556 -33.44922 -31.91780 -30.95529 -28.38400 -26.12347 -25.09761 -22.95156 -21.51437 -20.76735 -19.70811 -18.79430 -17.31038 -16.93063 -16.21692 -15.78674 -15.49677 -15.04008 -14.68849 -14.61407 -14.40055 -14.30171 -13.85019 -13.11293 -13.03647 -12.19735 -12.09004 -11.99153 -11.77296 -11.16205 -10.97724 -10.94434 -10.57993 -10.02701 -9.96613 -9.71636 -9.67826 -9.39038 -9.18639 -9.01719 -8.87781 -8.32522 -5.96443 -4.00700 0.24146 0.88141 1.28693 2.41095 3.21343 3.32605 3.35341 3.40300 3.43733 3.85691 3.99714 4.32466 4.46218 4.49665 4.74023 4.84010 5.09745 5.38684 5.41479 5.57702 5.69338 5.75948 6.22411 6.24267 6.60072 6.88771 7.02915 7.26711 7.74442 7.84096 7.85643 8.06774 8.38354 8.73912 9.08089 9.62930 11.14571 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.053409 B = 0.002909 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.130018 B = 9624.357840 C = 9780.199547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.739 5.739 14 C 0.093 3.907 15 C 0.178 3.822 16 H 0.128 0.872 17 O -0.545 6.545 18 C -0.254 4.254 19 C 0.047 3.953 20 N -0.470 5.470 21 C 0.020 3.980 22 S 0.139 5.861 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.402 0.598 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.377 0.623 32 H 0.179 0.821 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -24.073 -2.322 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.410 6.410 13 N -0.395 5.395 14 C -0.032 4.032 15 C 0.115 3.885 16 H 0.145 0.855 17 O -0.350 6.350 18 C -0.376 4.376 19 C -0.105 4.105 20 N -0.183 5.183 21 C -0.277 4.277 22 S 0.391 5.609 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.237 0.763 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.225 0.775 32 H 0.196 0.804 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.495 -24.141 -2.552 24.688 hybrid contribution 0.505 0.901 0.499 1.147 sum 5.000 -23.240 -2.053 23.860 Atomic orbital electron populations 1.70010 1.06067 1.26470 1.50304 1.25035 0.94831 0.99267 0.95317 0.86530 0.80016 0.83807 0.77579 1.19731 1.21022 1.21020 1.21263 0.92985 0.90985 1.51236 0.92519 1.18907 0.93188 0.89415 0.98609 1.21865 1.00709 0.91706 1.02618 1.21618 0.88640 0.85588 0.74288 1.90678 1.14521 1.87620 1.48201 1.46081 1.10361 1.04834 1.78208 1.21911 0.94430 0.83428 1.03471 1.20482 0.90688 0.86550 0.90737 0.85481 1.86644 1.36734 1.96059 1.15575 1.26788 1.09798 1.04556 0.96499 1.21782 0.98323 0.90056 1.00290 1.66332 1.14209 1.18650 1.19113 1.28466 1.04191 1.03745 0.91317 1.84006 1.48792 1.16512 1.11587 0.93008 0.95840 0.95842 0.90148 0.90123 0.76284 0.91366 0.90443 0.77473 0.80403 0.78214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.59 5.64 -27.89 -0.16 -2.75 16 11 C 0.51 9.63 7.83 -10.99 -0.09 9.54 16 12 O -0.54 -12.51 15.98 5.55 0.09 -12.42 16 13 N -0.74 -9.87 5.45 -60.29 -0.33 -10.20 16 14 C 0.09 1.06 5.32 -4.04 -0.02 1.04 16 15 C 0.18 1.50 3.52 -27.88 -0.10 1.40 16 16 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 17 O -0.54 -4.75 13.00 -35.23 -0.46 -5.21 16 18 C -0.25 -2.15 5.58 -35.92 -0.20 -2.35 16 19 C 0.05 0.42 11.25 -19.18 -0.22 0.21 16 20 N -0.47 -4.66 10.54 -15.75 -0.17 -4.83 16 21 C 0.02 0.15 12.23 51.58 0.63 0.78 16 22 S 0.14 0.98 22.52 -107.50 -2.42 -1.45 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.40 4.37 8.35 -40.82 -0.34 4.03 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.38 2.55 8.46 45.56 0.39 2.94 16 32 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.20 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 307.72 15.07 4.64 4.64 Total: -1.00 -35.86 307.72 -6.91 -42.77 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.30 Total: 1.74 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.68 Total: -4.96 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.24 Total: -41.76 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.37 Total: -17.63 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.42 Total: -1.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.86 -6.91 -42.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638157982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.290 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds