Wall clock time and date at job start Mon Mar 30 2020 00:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48499 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46893 * 300.00257 * 3 2 1 6 6 H 1.48495 * 109.46880 * 59.99869 * 3 2 1 7 7 C 1.37885 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99459 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47441 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47441 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99788 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99955 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00087 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47220 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.47472 * 60.00391 * 15 14 13 17 17 O 1.42906 * 109.47343 * 299.99945 * 15 14 13 18 18 C 1.50706 * 109.47049 * 180.02562 * 15 14 13 19 19 C 1.33641 * 126.03199 * 264.99889 * 18 15 14 20 20 N 1.31786 * 114.49506 * 179.97438 * 19 18 15 21 21 C 1.29021 * 117.12507 * 0.02562 * 20 19 18 22 22 S 1.70978 * 110.17026 * 359.72315 * 21 20 19 23 23 H 0.97006 * 119.99451 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47242 * 60.00145 * 9 7 2 25 25 H 1.08997 * 109.47155 * 300.00642 * 9 7 2 26 26 H 1.09001 * 109.47056 * 59.99697 * 10 9 7 27 27 H 1.09001 * 109.46950 * 300.00734 * 10 9 7 28 28 H 0.97003 * 120.00531 * 0.02562 * 13 11 10 29 29 H 1.09007 * 109.46426 * 60.00474 * 14 13 11 30 30 H 1.08997 * 109.47189 * 300.00815 * 14 13 11 31 31 H 0.96693 * 113.99950 * 300.00474 * 17 15 14 32 32 H 1.08001 * 122.75472 * 0.02562 * 19 18 15 33 33 H 1.08003 * 124.91171 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2449 -3.6622 -0.0005 11 6 1.4914 -4.9672 -0.0012 12 8 0.2785 -4.9671 -0.0021 13 7 2.1652 -6.1344 -0.0018 14 6 1.4326 -7.4032 -0.0019 15 6 2.4267 -8.5661 -0.0020 16 1 3.0534 -8.5086 0.8880 17 8 3.2483 -8.4904 -1.1688 18 6 1.6731 -9.8712 -0.0027 19 6 1.3613 -10.5995 1.0736 20 7 0.6953 -11.7059 0.8105 21 6 0.4285 -11.9515 -0.4277 22 16 1.0412 -10.7026 -1.4218 23 1 -0.4849 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 2.8716 -3.6045 0.8894 27 1 2.8717 -3.6045 -0.8905 28 1 3.1352 -6.1346 -0.0015 29 1 0.8056 -7.4606 -0.8917 30 1 0.8062 -7.4611 0.8883 31 1 2.7562 -8.5356 -1.9999 32 1 1.6321 -10.3051 2.0768 33 1 -0.1080 -12.8184 -0.7842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638157982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:34 Heat of formation + Delta-G solvation = -81.470862 kcal Electronic energy + Delta-G solvation = -17461.849808 eV Core-core repulsion = 14419.962579 eV Total energy + Delta-G solvation = -3041.887229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97993 -40.51855 -38.63130 -35.61644 -35.30961 -33.11436 -32.46944 -29.41923 -27.61003 -26.21444 -24.05174 -23.10634 -21.56080 -21.04952 -19.46106 -18.84567 -18.04324 -17.53103 -17.01975 -16.70970 -16.35574 -16.22030 -15.69883 -15.38291 -14.89874 -14.70383 -14.55732 -14.38312 -14.15685 -13.46138 -13.21703 -12.83523 -12.79103 -12.44498 -12.40920 -11.91382 -11.71675 -11.61687 -11.27811 -10.83232 -10.61791 -10.57413 -10.30684 -10.14402 -9.95254 -8.17613 -6.31345 -0.36155 0.31074 0.69755 1.43055 1.44269 1.57675 1.70253 1.76718 2.19990 2.44871 3.15639 3.21621 3.40346 3.57937 3.73325 3.99878 4.10968 4.32907 4.40325 4.51573 4.57846 4.66148 4.81890 5.09366 5.10242 5.39249 5.52024 5.64503 5.86555 6.18641 6.42583 6.59502 6.66940 6.87614 7.33231 7.39078 8.95280 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.053409 B = 0.002909 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.130018 B = 9624.357840 C = 9780.199547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.512 3.488 12 O -0.590 6.590 13 N -0.712 5.712 14 C 0.093 3.907 15 C 0.195 3.805 16 H 0.144 0.856 17 O -0.550 6.550 18 C -0.270 4.270 19 C 0.038 3.962 20 N -0.504 5.504 21 C 0.020 3.980 22 S 0.164 5.836 23 H 0.262 0.738 24 H -0.018 1.018 25 H -0.018 1.018 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.419 0.581 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.386 0.614 32 H 0.190 0.810 33 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -24.724 -2.657 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.301 3.699 12 O -0.470 6.470 13 N -0.366 5.366 14 C -0.032 4.032 15 C 0.132 3.868 16 H 0.161 0.839 17 O -0.357 6.357 18 C -0.392 4.392 19 C -0.114 4.114 20 N -0.218 5.218 21 C -0.276 4.276 22 S 0.417 5.583 23 H 0.071 0.929 24 H 0.001 0.999 25 H 0.000 1.000 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.257 0.743 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.207 0.793 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.944 -24.843 -2.902 25.958 hybrid contribution -0.276 0.996 0.560 1.176 sum 6.668 -23.847 -2.342 24.872 Atomic orbital electron populations 1.70186 1.08311 1.27714 1.51614 1.26146 0.95731 1.03970 0.94702 0.85271 0.79332 0.78103 0.77520 1.17572 1.20662 1.20676 1.21757 0.94031 0.91607 1.50542 0.90556 1.18700 0.93749 0.92521 0.94701 1.21634 0.99292 0.89970 1.04991 1.21338 0.87753 0.86746 0.74097 1.90665 1.16747 1.88398 1.51184 1.45726 1.11149 1.04094 1.75656 1.22040 0.95103 0.83310 1.02774 1.20299 0.89944 0.85149 0.91372 0.83882 1.86634 1.37006 1.95952 1.16060 1.26784 1.10524 1.04725 0.97190 1.22043 0.98159 0.90049 1.01108 1.66379 1.15562 1.19486 1.20380 1.29025 1.03268 1.04464 0.90875 1.83911 1.47991 1.15801 1.10591 0.92885 0.99941 0.99959 0.87624 0.87675 0.74268 0.92134 0.91257 0.76513 0.79349 0.75441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 4 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.27 4.26 29.85 0.13 2.40 16 10 C -0.12 -4.69 5.64 29.85 0.17 -4.52 16 11 C 0.51 19.24 7.83 87.66 0.69 19.93 16 12 O -0.59 -28.57 15.98 -3.04 -0.05 -28.62 16 13 N -0.71 -17.86 5.45 -463.06 -2.52 -20.38 16 14 C 0.09 2.01 5.32 86.38 0.46 2.47 16 15 C 0.19 2.88 3.52 29.85 0.10 2.99 16 16 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 17 O -0.55 -8.21 13.00 -148.98 -1.94 -10.15 16 18 C -0.27 -4.15 5.58 24.64 0.14 -4.02 16 19 C 0.04 0.64 11.25 83.66 0.94 1.58 16 20 N -0.50 -9.44 10.54 -203.74 -2.15 -11.59 16 21 C 0.02 0.27 12.23 130.66 1.60 1.87 16 22 S 0.16 2.03 22.52 -56.49 -1.27 0.76 16 23 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 24 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 25 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 26 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 27 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 28 H 0.42 7.87 8.35 -92.71 -0.77 7.10 16 29 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.39 4.34 8.46 -74.06 -0.63 3.72 16 32 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -80.35 307.72 -0.95 -81.30 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -0.26 Total: 9.53 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.92 Total: -7.83 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -4.39 Total: -91.28 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.99 Total: -38.77 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.27 Total: 0.76 kcal Total: -80.35 -0.95 -81.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638157982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.167 kcal (2) G-P(sol) polarization free energy of solvation -80.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds