Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40954 * 126.73176 * 2 1 4 4 C 1.36521 * 103.92034 * 180.02562 * 3 2 1 5 5 N 1.38729 * 126.88385 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00281 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00028 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99763 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47233 * 325.00069 * 8 6 5 10 10 C 1.52999 * 109.46959 * 84.99965 * 8 6 5 11 11 S 1.81398 * 109.47123 * 205.00045 * 8 6 5 12 12 C 1.81399 * 103.00088 * 175.00090 * 11 8 6 13 13 C 1.50699 * 109.47054 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47141 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47162 * 120.00342 * 17 15 13 20 20 H 1.48501 * 109.47494 * 240.00320 * 17 15 13 21 21 O 1.34249 * 106.24038 * 0.23950 * 4 3 2 22 22 N 1.20904 * 111.48219 * 359.56871 * 21 4 3 23 23 H 1.09000 * 109.47184 * 89.99784 * 1 2 3 24 24 H 1.09002 * 109.47175 * 209.99691 * 1 2 3 25 25 H 1.09002 * 109.47218 * 329.99744 * 1 2 3 26 26 H 1.07998 * 128.04034 * 359.97438 * 3 2 1 27 27 H 0.97006 * 119.99664 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.46854 * 179.97438 * 10 8 6 29 29 H 1.09000 * 109.47435 * 299.99790 * 10 8 6 30 30 H 1.09002 * 109.47063 * 60.00001 * 10 8 6 31 31 H 1.09000 * 109.47070 * 300.00061 * 12 11 8 32 32 H 1.09001 * 109.46593 * 60.00058 * 12 11 8 33 33 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3500 1.1297 0.0000 4 6 3.6084 0.6004 -0.0006 5 7 4.8061 1.3004 -0.0013 6 6 5.9769 0.6328 -0.0013 7 8 5.9834 -0.5799 -0.0012 8 6 7.2780 1.3934 -0.0027 9 1 7.1665 2.3030 -0.5929 10 6 7.6555 1.7606 1.4338 11 16 8.5818 0.3597 -0.7252 12 6 10.0071 1.4805 -0.7812 13 6 11.1923 0.7571 -1.3668 14 1 11.0977 -0.2739 -1.6741 15 6 12.3974 1.4114 -1.5102 16 7 12.5127 2.6668 -1.1354 17 14 13.8667 0.5146 -2.2354 18 1 13.4788 -0.8784 -2.5739 19 1 14.3168 1.2152 -3.4649 20 1 14.9726 0.4940 -1.2445 21 8 3.4548 -0.7333 -0.0063 22 7 2.2865 -1.0444 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 2.0663 2.1717 -0.0004 27 1 4.8009 2.2705 -0.0018 28 1 8.5968 2.3103 1.4328 29 1 6.8721 2.3817 1.8679 30 1 7.7670 0.8510 2.0240 31 1 9.7658 2.3444 -1.4005 32 1 10.2475 1.8131 0.2286 33 1 13.3603 3.1273 -1.2366 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643988932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = 19.646699 kcal Electronic energy + Delta-G solvation = -17621.286345 eV Core-core repulsion = 14583.783903 eV Total energy + Delta-G solvation = -3037.502442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.97987 -40.07810 -35.63412 -34.83207 -33.33595 -33.07535 -30.32733 -28.87274 -28.56003 -25.01576 -23.42424 -23.19880 -22.03744 -19.95626 -18.50284 -17.80102 -17.39923 -16.54857 -16.19268 -15.48092 -15.24040 -14.60712 -14.30920 -13.87528 -13.61162 -13.43826 -13.25011 -12.93990 -12.72648 -12.46218 -12.37743 -11.81407 -11.69652 -11.51395 -11.31522 -10.92204 -10.71100 -10.17738 -10.10451 -9.99149 -9.61235 -8.86575 -8.67618 -8.66065 -6.78154 -6.24752 -4.28571 1.22653 1.85368 2.00807 2.35617 2.70009 3.23256 3.30762 3.33322 3.37645 3.73339 3.99096 4.32663 4.51212 4.66730 4.83007 4.97769 5.12364 5.13134 5.15355 5.21863 5.31674 5.50596 5.58489 5.83190 5.86151 6.04036 6.22147 6.76656 7.00271 7.02759 7.71008 7.77504 7.95128 8.22080 8.73866 9.35104 10.86657 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.057359 B = 0.003293 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.037158 B = 8499.849898 C = 8751.906510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.036 3.964 3 C -0.283 4.283 4 C 0.225 3.775 5 N -0.630 5.630 6 C 0.530 3.470 7 O -0.467 6.467 8 C -0.094 4.094 9 H 0.105 0.895 10 C -0.140 4.140 11 S -0.231 6.231 12 C 0.078 3.922 13 C -0.511 4.511 14 H 0.069 0.931 15 C 0.066 3.934 16 N -0.893 5.893 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 O 0.112 5.888 22 N -0.371 5.371 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.174 0.826 27 H 0.432 0.568 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.987 3.468 3.995 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C -0.310 4.310 4 C 0.065 3.935 5 N -0.285 5.285 6 C 0.316 3.684 7 O -0.335 6.335 8 C -0.226 4.226 9 H 0.123 0.877 10 C -0.199 4.199 11 S -0.004 6.004 12 C -0.069 4.069 13 C -0.551 4.551 14 H 0.087 0.913 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 O 0.052 5.948 22 N -0.081 5.081 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.192 0.808 27 H 0.272 0.728 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.023 0.311 3.682 20.361 hybrid contribution 0.910 2.482 -0.030 2.644 sum -19.113 2.794 3.652 19.658 Atomic orbital electron populations 1.20157 0.85821 1.03744 1.03407 1.23191 0.98818 0.88464 1.01757 1.21776 0.88916 1.01308 1.18991 1.20878 0.88181 0.84786 0.99704 1.42983 1.01453 1.10502 1.73558 1.20575 0.84175 0.88504 0.75191 1.90842 1.86181 1.13206 1.43261 1.23130 0.94530 1.02402 1.02518 0.87725 1.22009 1.02692 1.02917 0.92311 1.87319 1.07530 1.24532 1.80999 1.21218 0.90407 0.94723 1.00535 1.20675 0.93439 0.98792 1.42178 0.91328 1.24946 0.98684 0.94958 0.95177 1.69952 1.26090 1.10101 1.46982 0.86288 0.81640 0.79990 0.78735 1.19333 1.20717 1.20684 1.85155 1.21549 1.19615 1.68481 1.73949 0.88536 1.23110 1.22517 0.90102 0.90526 0.89997 0.80836 0.72752 0.89967 0.92338 0.90758 0.94573 0.94199 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.47 36.00 0.38 -0.14 16 2 C 0.04 0.41 7.31 -82.20 -0.60 -0.20 16 3 C -0.28 -2.79 11.15 -39.17 -0.44 -3.22 16 4 C 0.23 2.86 7.92 -15.05 -0.12 2.74 16 5 N -0.63 -7.06 5.39 -11.79 -0.06 -7.13 16 6 C 0.53 8.15 6.91 -10.98 -0.08 8.07 16 7 O -0.47 -9.24 14.98 -15.84 -0.24 -9.47 16 8 C -0.09 -1.46 3.17 -27.88 -0.09 -1.54 16 9 H 0.10 1.36 8.14 -51.92 -0.42 0.94 16 10 C -0.14 -1.91 9.08 37.16 0.34 -1.57 16 11 S -0.23 -4.98 20.37 -107.50 -2.19 -7.17 16 12 C 0.08 1.93 5.39 36.01 0.19 2.12 16 13 C -0.51 -14.12 9.13 -34.44 -0.31 -14.43 16 14 H 0.07 1.93 7.71 -52.48 -0.40 1.52 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 17 Si 0.91 21.12 29.54 -169.99 -5.02 16.09 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 O 0.11 1.80 9.63 -4.77 -0.05 1.76 16 22 N -0.37 -5.50 12.06 33.48 0.40 -5.10 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 27 H 0.43 2.94 8.82 -40.82 -0.36 2.58 16 28 H 0.08 1.21 6.92 -51.93 -0.36 0.85 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.04 1.00 7.14 -51.92 -0.37 0.63 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -33.33 306.53 -6.63 -39.96 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.01 Total: -2.66 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.82 Total: -6.44 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 1.08 Total: -36.68 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.28 Total: -7.72 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.19 Total: -7.17 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.33 -6.63 -39.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643988932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.606 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds