Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40954 * 126.73176 * 2 1 4 4 C 1.36521 * 103.92034 * 180.02562 * 3 2 1 5 5 N 1.38729 * 126.88385 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00281 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00028 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99763 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.47233 * 325.00069 * 8 6 5 10 10 C 1.52999 * 109.46959 * 84.99965 * 8 6 5 11 11 S 1.81398 * 109.47123 * 205.00045 * 8 6 5 12 12 C 1.81399 * 103.00088 * 175.00090 * 11 8 6 13 13 C 1.50699 * 109.47054 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47141 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47162 * 120.00342 * 17 15 13 20 20 H 1.48501 * 109.47494 * 240.00320 * 17 15 13 21 21 O 1.34249 * 106.24038 * 0.23950 * 4 3 2 22 22 N 1.20904 * 111.48219 * 359.56871 * 21 4 3 23 23 H 1.09000 * 109.47184 * 89.99784 * 1 2 3 24 24 H 1.09002 * 109.47175 * 209.99691 * 1 2 3 25 25 H 1.09002 * 109.47218 * 329.99744 * 1 2 3 26 26 H 1.07998 * 128.04034 * 359.97438 * 3 2 1 27 27 H 0.97006 * 119.99664 * 359.97438 * 5 4 3 28 28 H 1.09001 * 109.46854 * 179.97438 * 10 8 6 29 29 H 1.09000 * 109.47435 * 299.99790 * 10 8 6 30 30 H 1.09002 * 109.47063 * 60.00001 * 10 8 6 31 31 H 1.09000 * 109.47070 * 300.00061 * 12 11 8 32 32 H 1.09001 * 109.46593 * 60.00058 * 12 11 8 33 33 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3500 1.1297 0.0000 4 6 3.6084 0.6004 -0.0006 5 7 4.8061 1.3004 -0.0013 6 6 5.9769 0.6328 -0.0013 7 8 5.9834 -0.5799 -0.0012 8 6 7.2780 1.3934 -0.0027 9 1 7.1665 2.3030 -0.5929 10 6 7.6555 1.7606 1.4338 11 16 8.5818 0.3597 -0.7252 12 6 10.0071 1.4805 -0.7812 13 6 11.1923 0.7571 -1.3668 14 1 11.0977 -0.2739 -1.6741 15 6 12.3974 1.4114 -1.5102 16 7 12.5127 2.6668 -1.1354 17 14 13.8667 0.5146 -2.2354 18 1 13.4788 -0.8784 -2.5739 19 1 14.3168 1.2152 -3.4649 20 1 14.9726 0.4940 -1.2445 21 8 3.4548 -0.7333 -0.0063 22 7 2.2865 -1.0444 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 2.0663 2.1717 -0.0004 27 1 4.8009 2.2705 -0.0018 28 1 8.5968 2.3103 1.4328 29 1 6.8721 2.3817 1.8679 30 1 7.7670 0.8510 2.0240 31 1 9.7658 2.3444 -1.4005 32 1 10.2475 1.8131 0.2286 33 1 13.3603 3.1273 -1.2366 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643988932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = -2.869905 kcal Electronic energy + Delta-G solvation = -17622.262739 eV Core-core repulsion = 14583.783903 eV Total energy + Delta-G solvation = -3038.478836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.91889 -41.28253 -36.73341 -35.69702 -35.30303 -34.41801 -31.29801 -30.59382 -29.56111 -26.17512 -25.23191 -24.32458 -23.13619 -20.99339 -19.51915 -18.82494 -18.76318 -18.29720 -17.41522 -16.91982 -16.52047 -16.31400 -15.57806 -15.06120 -14.63797 -14.48539 -14.29036 -14.17173 -13.99933 -13.87745 -13.52614 -13.31016 -13.01516 -12.73771 -12.67629 -12.54891 -12.14758 -11.84404 -11.59792 -11.35384 -11.01334 -10.73708 -10.59144 -9.64548 -8.54043 -8.33684 -6.44983 0.19192 0.57531 1.12349 1.26341 1.39542 1.41102 1.54159 1.57893 1.92776 2.31974 2.37537 3.01597 3.24637 3.46331 3.78186 3.85052 3.95277 3.98327 4.45053 4.60101 4.67343 4.71922 4.76259 4.90353 4.95780 4.97122 5.06531 5.15331 5.30802 5.58128 5.87817 5.90839 6.61432 6.66606 7.22633 7.29106 8.78167 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.057359 B = 0.003293 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.037158 B = 8499.849898 C = 8751.906510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.037 3.963 3 C -0.251 4.251 4 C 0.197 3.803 5 N -0.604 5.604 6 C 0.536 3.464 7 O -0.520 6.520 8 C -0.077 4.077 9 H 0.138 0.862 10 C -0.136 4.136 11 S -0.279 6.279 12 C 0.092 3.908 13 C -0.538 4.538 14 H 0.055 0.945 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.970 3.030 18 H -0.271 1.271 19 H -0.271 1.271 20 H -0.272 1.272 21 O 0.065 5.935 22 N -0.410 5.410 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.220 0.780 27 H 0.455 0.545 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.028 0.972 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.819 5.369 4.161 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C -0.277 4.277 4 C 0.037 3.963 5 N -0.261 5.261 6 C 0.322 3.678 7 O -0.392 6.392 8 C -0.209 4.209 9 H 0.155 0.845 10 C -0.195 4.195 11 S -0.052 6.052 12 C -0.055 4.055 13 C -0.577 4.577 14 H 0.073 0.927 15 C -0.181 4.181 16 N -0.558 5.558 17 Si 0.794 3.206 18 H -0.196 1.196 19 H -0.196 1.196 20 H -0.197 1.197 21 O 0.010 5.990 22 N -0.126 5.126 23 H 0.113 0.887 24 H 0.093 0.907 25 H 0.131 0.869 26 H 0.236 0.764 27 H 0.300 0.700 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.849 2.280 3.850 22.302 hybrid contribution 1.247 1.952 -0.044 2.316 sum -20.602 4.231 3.806 21.373 Atomic orbital electron populations 1.20381 0.82855 1.05186 1.04715 1.24053 1.00689 0.88067 0.99327 1.22361 0.86942 1.02898 1.15485 1.21283 0.89242 0.84250 1.01496 1.42564 0.99992 1.11341 1.72229 1.20432 0.85066 0.87742 0.74554 1.90837 1.86963 1.15399 1.45967 1.23159 0.92097 1.01862 1.03738 0.84461 1.21977 1.03781 1.02862 0.90876 1.87346 1.09181 1.26339 1.82332 1.20847 0.91140 0.94379 0.99144 1.20973 0.95188 0.98582 1.42958 0.92672 1.25769 1.01271 0.95724 0.95289 1.70022 1.27080 1.11195 1.47520 0.85315 0.78274 0.78619 0.78374 1.19551 1.19631 1.19699 1.85094 1.22374 1.21569 1.69951 1.73990 0.88682 1.25127 1.24846 0.88703 0.90732 0.86937 0.76352 0.70008 0.91175 0.87483 0.92307 0.95784 0.95348 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.47 71.24 0.75 -0.04 16 2 C 0.04 0.74 7.31 43.45 0.32 1.06 16 3 C -0.25 -4.05 11.15 22.53 0.25 -3.80 16 4 C 0.20 4.68 7.92 83.20 0.66 5.34 16 5 N -0.60 -12.17 5.39 -419.70 -2.26 -14.44 16 6 C 0.54 16.07 6.91 87.66 0.61 16.67 16 7 O -0.52 -21.11 14.98 17.45 0.26 -20.85 16 8 C -0.08 -2.29 3.17 29.85 0.09 -2.20 16 9 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 10 C -0.14 -3.50 9.08 71.98 0.65 -2.84 16 11 S -0.28 -12.36 20.37 -56.49 -1.15 -13.51 16 12 C 0.09 4.68 5.39 71.24 0.38 5.06 16 13 C -0.54 -30.48 9.13 25.60 0.23 -30.25 16 14 H 0.06 3.20 7.71 -2.91 -0.02 3.18 16 15 C 0.02 1.15 5.46 84.65 0.46 1.61 16 16 N -0.92 -52.15 13.29 21.45 0.28 -51.87 16 17 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 O 0.06 2.12 9.63 90.12 0.87 2.99 16 22 N -0.41 -12.13 12.06 -49.01 -0.59 -12.72 16 23 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.22 1.34 8.06 -2.91 -0.02 1.32 16 27 H 0.45 4.40 8.82 -92.70 -0.82 3.58 16 28 H 0.07 2.01 6.92 -2.39 -0.02 1.99 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.03 1.47 7.14 -2.39 -0.02 1.45 16 33 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -76.79 306.53 4.16 -72.63 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 0.32 Total: 1.64 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.41 Total: -9.39 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.57 Total: -79.03 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 1.13 Total: -17.86 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -12.36 SS G_CDS: -1.15 Total: -13.51 kcal Total: -76.79 4.16 -72.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643988932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.761 kcal (2) G-P(sol) polarization free energy of solvation -76.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds